LncBase Predicted v.2
Help
Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
Bulk download:
We have updated the bulk download module, which simplifies the download process! Please find the new online form by following this link
Deprecated!
This version is deprecated. Users are strongly advised to only use the latest, up-to-date versions of DIANA-Tools and Databases.
Please follow this link to navigate to the latest database version.

hsa-miR-223-3p


or   Search by location
Loading... Please wait, this might take a few seconds...



Go to Experimental module
Filters

Gene
miRNA
Score
DIANA Links
CTC-366B18.4
hsa-miR-223-3p
0.902
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000606908
Biotype: lincRNA
Gene id: ENSG00000272040
Gene Name: CTC-366B18.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-223-3p
Sequence: ugucaguuugucaaauacccca
MirBase ID: MIMAT0000280
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
1056-1075
0.047
0
XLOC_011134
hsa-miR-223-3p
0.902
mTTBlnEmP

Gene Details
Chromosome: chr14
Transcript: TCONS_00022880
Biotype: transcript isomorph
Gene id: XLOC_011134
Gene Name: XLOC_011134
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-223-3p
Sequence: ugucaguuugucaaauacccca
MirBase ID: MIMAT0000280
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
104-112
0.043
2
6mer
1564-1588
0.004
2
AC118653.2
hsa-miR-223-3p
0.902
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000450826
Biotype: lincRNA
Gene id: ENSG00000225818
Gene Name: AC118653.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-223-3p
Sequence: ugucaguuugucaaauacccca
MirBase ID: MIMAT0000280
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
91-101
0.047
0
RP11-690C23.2
hsa-miR-223-3p
0.901
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000366308
Biotype: lincRNA
Gene id: ENSG00000242042
Gene Name: RP11-690C23.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-223-3p
Sequence: ugucaguuugucaaauacccca
MirBase ID: MIMAT0000280
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
81-94
0.047
0
CTD-2143L24.1
hsa-miR-223-3p
0.901
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000606744
Biotype: lincRNA
Gene id: ENSG00000249781
Gene Name: CTD-2143L24.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-223-3p
Sequence: ugucaguuugucaaauacccca
MirBase ID: MIMAT0000280
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
104-113
0.040
9
6mer
109-130
0.007
2
RP11-192H23.7
hsa-miR-223-3p
0.900
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000577814
Biotype: antisense
Gene id: ENSG00000264044
Gene Name: RP11-192H23.7
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-223-3p
Sequence: ugucaguuugucaaauacccca
MirBase ID: MIMAT0000280
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
79-87
0.042
7
6mer
1158-1172
0.005
0
XLOC_003181
hsa-miR-223-3p
0.900
mTTBlnEmP

Gene Details
Chromosome: chr3
Transcript: TCONS_00007196
Biotype: transcript isomorph
Gene id: XLOC_003181
Gene Name: XLOC_003181
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
- Brain Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
HepG2 Liver Cancer/Malignant
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
- Lymph Node Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-223-3p
Sequence: ugucaguuugucaaauacccca
MirBase ID: MIMAT0000280
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
384-392
0.047
Not Conserved
RP5-936J12.1
hsa-miR-223-3p
0.899
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000414418
Biotype: lincRNA
Gene id: ENSG00000230864
Gene Name: RP5-936J12.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-223-3p
Sequence: ugucaguuugucaaauacccca
MirBase ID: MIMAT0000280
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
48-71
0.041
3
6mer
68-78
0.005
0
RP11-475D12.2
hsa-miR-223-3p
0.898
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000435367
Biotype: lincRNA
Gene id: ENSG00000224504
Gene Name: RP11-475D12.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-223-3p
Sequence: ugucaguuugucaaauacccca
MirBase ID: MIMAT0000280
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
128-144
0.033
1
8mer
698-713
0.014
1
RP11-386B13.3
hsa-miR-223-3p
0.896
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000511746
Biotype: lincRNA
Gene id: ENSG00000250754
Gene Name: RP11-386B13.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-223-3p
Sequence: ugucaguuugucaaauacccca
MirBase ID: MIMAT0000280
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
866-882
0.046
15
RP13-192B19.2
hsa-miR-223-3p
0.896
mTTBlnEmP

Gene Details
Chromosome: X
Transcript: ENST00000569460
Biotype: lincRNA
Gene id: ENSG00000260585
Gene Name: RP13-192B19.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-223-3p
Sequence: ugucaguuugucaaauacccca
MirBase ID: MIMAT0000280
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
3596-3614
0.029
2
6mer
4769-4780
0.006
1
6mer
301-313
0.004
2
6mer
626-644
0.003
Not Conserved
6mer
1262-1280
0.003
1
6mer
2272-2281
0.001
1
RP11-357F12.1
hsa-miR-223-3p
0.895
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000506656
Biotype: lincRNA
Gene id: ENSG00000248148
Gene Name: RP11-357F12.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-223-3p
Sequence: ugucaguuugucaaauacccca
MirBase ID: MIMAT0000280
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
163-190
0.042
0
6mer
422-441
0.003
0
RP11-158I23.1
hsa-miR-223-3p
0.895
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000508263
Biotype: antisense
Gene id: ENSG00000248607
Gene Name: RP11-158I23.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-223-3p
Sequence: ugucaguuugucaaauacccca
MirBase ID: MIMAT0000280
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
122-140
0.046
1
RP11-491F9.1
hsa-miR-223-3p
0.894
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000564875
Biotype: antisense
Gene id: ENSG00000260614
Gene Name: RP11-491F9.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-223-3p
Sequence: ugucaguuugucaaauacccca
MirBase ID: MIMAT0000280
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
359-369
0.045
1
RP11-217E22.5
hsa-miR-223-3p
0.892
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000463297
Biotype: lincRNA
Gene id: ENSG00000243486
Gene Name: RP11-217E22.5
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-223-3p
Sequence: ugucaguuugucaaauacccca
MirBase ID: MIMAT0000280
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
214-223
0.045
2
MKLN1-AS
hsa-miR-223-3p
0.892
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000447904
Biotype: retained_intron
Gene id: ENSG00000236753
Gene Name: MKLN1-AS
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-223-3p
Sequence: ugucaguuugucaaauacccca
MirBase ID: MIMAT0000280
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
704-731
0.035
2
6mer
127-146
0.005
1
6mer
180-199
0.005
1
CTD-3080P12.3
hsa-miR-223-3p
0.891
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000512572
Biotype: antisense
Gene id: ENSG00000249201
Gene Name: CTD-3080P12.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
HepG2 Liver Cancer/Malignant


miRNA Details
Name: hsa-miR-223-3p
Sequence: ugucaguuugucaaauacccca
MirBase ID: MIMAT0000280
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
691-706
0.019
0
7mer
263-288
0.017
0
6mer
639-665
0.005
1
6mer
405-417
0.004
1
RP5-1007G16.1
hsa-miR-223-3p
0.890
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: NR_038372.1
Biotype: antisense
Gene id: NR_038372.1 (gene)
Gene Name: RP5-1007G16.1
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-223-3p
Sequence: ugucaguuugucaaauacccca
MirBase ID: MIMAT0000280
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
229-238
0.045
2
FAM66C
hsa-miR-223-3p
0.889
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000420514
Biotype: antisense
Gene id: ENSG00000226711
Gene Name: FAM66C
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-223-3p
Sequence: ugucaguuugucaaauacccca
MirBase ID: MIMAT0000280
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
473-498
0.035
0
6mer
41-58
0.010
0
RP11-63C8.1
hsa-miR-223-3p
0.887
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000524493
Biotype: lincRNA
Gene id: ENSG00000255132
Gene Name: RP11-63C8.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-223-3p
Sequence: ugucaguuugucaaauacccca
MirBase ID: MIMAT0000280
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
548-557
0.044
3
Funded by:
We have placed cookies on your device to help make this website and the services we offer better. By using this site, you agree to the use of cookies. Learn more
I accept