LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-223-3p


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Gene
miRNA
Score
DIANA Links
RP11-19D2.2
hsa-miR-223-3p
0.919
mTTBlnEmP

Gene Details
Chromosome: 20
Transcript: ENST00000569178
Biotype: lincRNA
Gene id: ENSG00000261249
Gene Name: RP11-19D2.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-223-3p
Sequence: ugucaguuugucaaauacccca
MirBase ID: MIMAT0000280
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
1460-1473
0.037
1
6mer
252-262
0.007
4
6mer
397-418
0.006
6
CSMD2-AS1
hsa-miR-223-3p
0.917
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000438719
Biotype: antisense
Gene id: ENSG00000231163
Gene Name: CSMD2-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-223-3p
Sequence: ugucaguuugucaaauacccca
MirBase ID: MIMAT0000280
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
316-330
0.045
2
6mer
74-85
0.005
1
XLOC_005629
hsa-miR-223-3p
0.916
mTTBlnEmP

Gene Details
Chromosome: chr6
Transcript: TCONS_00012100
Biotype: transcript isomorph
Gene id: XLOC_005629
Gene Name: XLOC_005629
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Breast Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-223-3p
Sequence: ugucaguuugucaaauacccca
MirBase ID: MIMAT0000280
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
282-301
0.043
5
7mer
3316-3338
0.007
Not Conserved
LINC00469
hsa-miR-223-3p
0.916
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000321800
Biotype: lincRNA
Gene id: ENSG00000177338
Gene Name: LINC00469
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-223-3p
Sequence: ugucaguuugucaaauacccca
MirBase ID: MIMAT0000280
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
94-118
0.050
3
RP11-448G15.3
hsa-miR-223-3p
0.914
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000561486
Biotype: sense_overlapping
Gene id: ENSG00000261490
Gene Name: RP11-448G15.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-223-3p
Sequence: ugucaguuugucaaauacccca
MirBase ID: MIMAT0000280
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
2764-2783
0.025
1
7mer
522-537
0.010
0
7mer
2855-2879
0.006
1
8mer+wobble
289-312
0.005
0
6mer
3054-3076
0.003
1
RP3-518E13.2
hsa-miR-223-3p
0.913
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000569593
Biotype: antisense
Gene id: ENSG00000260990
Gene Name: RP3-518E13.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-223-3p
Sequence: ugucaguuugucaaauacccca
MirBase ID: MIMAT0000280
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
446-462
0.049
5
CTD-2319I12.2
hsa-miR-223-3p
0.913
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000589740
Biotype: lincRNA
Gene id: ENSG00000267416
Gene Name: CTD-2319I12.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-223-3p
Sequence: ugucaguuugucaaauacccca
MirBase ID: MIMAT0000280
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
420-429
0.046
2
6mer
503-521
0.003
0
RP11-89N17.4
hsa-miR-223-3p
0.912
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000440034
Biotype: lincRNA
Gene id: ENSG00000236494
Gene Name: RP11-89N17.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Breast Normal/Primary
- Kidney Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary


miRNA Details
Name: hsa-miR-223-3p
Sequence: ugucaguuugucaaauacccca
MirBase ID: MIMAT0000280
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
749-764
0.032
2
7mer
730-752
0.011
1
6mer
901-922
0.005
0
LINC01504
hsa-miR-223-3p
0.912
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000436054
Biotype: lincRNA
Gene id: ENSG00000225434
Gene Name: LINC01504
UCSC graphic:
Expression:
  Cell Line Tissue Category
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-223-3p
Sequence: ugucaguuugucaaauacccca
MirBase ID: MIMAT0000280
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
297-309
0.043
2
6mer
1877-1888
0.006
2
XLOC_001137
hsa-miR-223-3p
0.911
mTTBlnEmP

Gene Details
Chromosome: chr1
Transcript: TCONS_00000709
Biotype: transcript isomorph
Gene id: XLOC_001137
Gene Name: XLOC_001137
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary


miRNA Details
Name: hsa-miR-223-3p
Sequence: ugucaguuugucaaauacccca
MirBase ID: MIMAT0000280
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1165-1181
0.049
3
RP11-108M9.3
hsa-miR-223-3p
0.911
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000457856
Biotype: lincRNA
Gene id: ENSG00000228549
Gene Name: RP11-108M9.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-223-3p
Sequence: ugucaguuugucaaauacccca
MirBase ID: MIMAT0000280
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
247-262
0.049
1
XLOC_007180
hsa-miR-223-3p
0.911
mTTBlnEmP

Gene Details
Chromosome: chr8
Transcript: TCONS_00015133
Biotype: transcript isomorph
Gene id: XLOC_007180
Gene Name: XLOC_007180
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-223-3p
Sequence: ugucaguuugucaaauacccca
MirBase ID: MIMAT0000280
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
107-126
0.049
3
RP11-461O7.1
hsa-miR-223-3p
0.910
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000569025
Biotype: lincRNA
Gene id: ENSG00000246379
Gene Name: RP11-461O7.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-223-3p
Sequence: ugucaguuugucaaauacccca
MirBase ID: MIMAT0000280
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
697-706
0.049
2
RP11-257A22.1
hsa-miR-223-3p
0.910
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000507857
Biotype: lincRNA
Gene id: ENSG00000251055
Gene Name: RP11-257A22.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-223-3p
Sequence: ugucaguuugucaaauacccca
MirBase ID: MIMAT0000280
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
405-420
0.049
Not Conserved
XLOC_005479
hsa-miR-223-3p
0.907
mTTBlnEmP

Gene Details
Chromosome: chr6
Transcript: TCONS_00012608
Biotype: transcript isomorph
Gene id: XLOC_005479
Gene Name: XLOC_005479
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Kidney Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-223-3p
Sequence: ugucaguuugucaaauacccca
MirBase ID: MIMAT0000280
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
193-210
0.048
1
RP11-139E19.3
hsa-miR-223-3p
0.906
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000619826
Biotype: sense_intronic
Gene id: ENSG00000278351
Gene Name: RP11-139E19.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-223-3p
Sequence: ugucaguuugucaaauacccca
MirBase ID: MIMAT0000280
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
85-99
0.048
2
XLOC_008878
hsa-miR-223-3p
0.906
mTTBlnEmP

Gene Details
Chromosome: chr10
Transcript: TCONS_00017740
Biotype: transcript isomorph
Gene id: XLOC_008878
Gene Name: XLOC_008878
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
- Brain Normal/Primary
- Colon Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-223-3p
Sequence: ugucaguuugucaaauacccca
MirBase ID: MIMAT0000280
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1278-1294
0.031
0
6mer
1729-1748
0.017
0
RP11-121A8.1
hsa-miR-223-3p
0.906
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000609522
Biotype: lincRNA
Gene id: ENSG00000272908
Gene Name: RP11-121A8.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-223-3p
Sequence: ugucaguuugucaaauacccca
MirBase ID: MIMAT0000280
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1338-1345
0.035
1
6mer
1707-1734
0.005
1
6mer
877-881
0.004
1
6mer
1282-1301
0.004
2
RP1-45N11.1
hsa-miR-223-3p
0.906
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000569865
Biotype: lincRNA
Gene id: ENSG00000260271
Gene Name: RP1-45N11.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
- Lymph Node Normal/Primary


miRNA Details
Name: hsa-miR-223-3p
Sequence: ugucaguuugucaaauacccca
MirBase ID: MIMAT0000280
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
123-139
0.043
1
6mer
219-245
0.004
2
XLOC_007827
hsa-miR-223-3p
0.904
mTTBlnEmP

Gene Details
Chromosome: chr9
Transcript: TCONS_00016461
Biotype: transcript isomorph
Gene id: XLOC_007827
Gene Name: XLOC_007827
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Breast Normal/Primary
- Kidney Normal/Primary
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-223-3p
Sequence: ugucaguuugucaaauacccca
MirBase ID: MIMAT0000280
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
430-440
0.047
1
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