LncBase Predicted v.2
Help
Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
Bulk download:
We have updated the bulk download module, which simplifies the download process! Please find the new online form by following this link
Deprecated!
This version is deprecated. Users are strongly advised to only use the latest, up-to-date versions of DIANA-Tools and Databases.
Please follow this link to navigate to the latest database version.

hsa-miR-223-3p


or   Search by location
Loading... Please wait, this might take a few seconds...



Go to Experimental module
Filters

Gene
miRNA
Score
DIANA Links
XLOC_013022
hsa-miR-223-3p
0.927
mTTBlnEmP

Gene Details
Chromosome: chr19
Transcript: TCONS_00026969
Biotype: transcript isomorph
Gene id: XLOC_013022
Gene Name: XLOC_013022
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Kidney Normal/Primary


miRNA Details
Name: hsa-miR-223-3p
Sequence: ugucaguuugucaaauacccca
MirBase ID: MIMAT0000280
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
137-145
0.052
0
RP5-1027G4.3
hsa-miR-223-3p
0.927
mTTBlnEmP

Gene Details
Chromosome: 20
Transcript: ENST00000319682
Biotype: antisense
Gene id: ENSG00000179447
Gene Name: RP5-1027G4.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-223-3p
Sequence: ugucaguuugucaaauacccca
MirBase ID: MIMAT0000280
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
59-65
0.046
5
6mer
1682-1700
0.006
3
RP5-1119O21.2
hsa-miR-223-3p
0.926
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000413941
Biotype: lincRNA
Gene id: ENSG00000226861
Gene Name: RP5-1119O21.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-223-3p
Sequence: ugucaguuugucaaauacccca
MirBase ID: MIMAT0000280
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
672-686
0.042
10
7mer
324-342
0.010
Not Conserved
XLOC_009839
hsa-miR-223-3p
0.926
mTTBlnEmP

Gene Details
Chromosome: chr12
Transcript: TCONS_00020522
Biotype: transcript isomorph
Gene id: XLOC_009839
Gene Name: XLOC_009839
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Kidney Normal/Primary
- Testes Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-223-3p
Sequence: ugucaguuugucaaauacccca
MirBase ID: MIMAT0000280
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2028-2042
0.031
0
8mer
593-613
0.018
1
6mer
945-961
0.004
4
RP11-685N10.1
hsa-miR-223-3p
0.926
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000541092
Biotype: antisense
Gene id: ENSG00000255893
Gene Name: RP11-685N10.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-223-3p
Sequence: ugucaguuugucaaauacccca
MirBase ID: MIMAT0000280
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
18-27
0.052
1
XLOC_010791
hsa-miR-223-3p
0.926
mTTBlnEmP

Gene Details
Chromosome: chr14
Transcript: TCONS_00022460
Biotype: transcript isomorph
Gene id: XLOC_010791
Gene Name: XLOC_010791
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
Fibroblasts Lung Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-223-3p
Sequence: ugucaguuugucaaauacccca
MirBase ID: MIMAT0000280
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1105-1130
0.040
10
7mer
1160-1184
0.012
7
RP11-47L3.1
hsa-miR-223-3p
0.926
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000585387
Biotype: lincRNA
Gene id: ENSG00000267364
Gene Name: RP11-47L3.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-223-3p
Sequence: ugucaguuugucaaauacccca
MirBase ID: MIMAT0000280
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
209-227
0.052
0
LOC102546175
hsa-miR-223-3p
0.926
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: NR_105016.1
Biotype: lincRNA
Gene id: NR_105016.1 (gene)
Gene Name: LOC102546175
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-223-3p
Sequence: ugucaguuugucaaauacccca
MirBase ID: MIMAT0000280
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
27-42
0.043
0
6mer
205-232
0.005
2
6mer
161-187
0.004
3
LINC00475
hsa-miR-223-3p
0.924
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000434944
Biotype: lincRNA
Gene id: ENSG00000225511
Gene Name: LINC00475
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
Fibroblasts Lung Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
- Lung Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
- Prostate Normal/Primary


miRNA Details
Name: hsa-miR-223-3p
Sequence: ugucaguuugucaaauacccca
MirBase ID: MIMAT0000280
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
661-675
0.042
0
6mer
641-659
0.009
0
LOC100190986
hsa-miR-223-3p
0.924
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: NR_024456.1
Biotype: sense
Gene id: NR_024456.1 (gene)
Gene Name: LOC100190986
UCSC graphic: -
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-223-3p
Sequence: ugucaguuugucaaauacccca
MirBase ID: MIMAT0000280
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
321-340
0.029
0
6mer
2395-2412
0.017
0
6mer
1128-1149
0.006
0
XLOC_000371
hsa-miR-223-3p
0.924
mTTBlnEmP

Gene Details
Chromosome: chr1
Transcript: TCONS_00001130
Biotype: transcript isomorph
Gene id: XLOC_000371
Gene Name: XLOC_000371
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Breast Normal/Primary
- Ovary Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-223-3p
Sequence: ugucaguuugucaaauacccca
MirBase ID: MIMAT0000280
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
103-112
0.052
1
XLOC_005808
hsa-miR-223-3p
0.923
mTTBlnEmP

Gene Details
Chromosome: chr6
Transcript: TCONS_00012253
Biotype: transcript isomorph
Gene id: XLOC_005808
Gene Name: XLOC_005808
UCSC graphic: -
Expression:
  Cell Line Tissue Category
Fibroblasts Foreskin Normal/Primary
Fibroblasts Lung Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-223-3p
Sequence: ugucaguuugucaaauacccca
MirBase ID: MIMAT0000280
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1354-1372
0.051
4
AC024560.2
hsa-miR-223-3p
0.921
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000424493
Biotype: lincRNA
Gene id: ENSG00000236833
Gene Name: AC024560.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-223-3p
Sequence: ugucaguuugucaaauacccca
MirBase ID: MIMAT0000280
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
476-495
0.051
0
XLOC_003616
hsa-miR-223-3p
0.921
mTTBlnEmP

Gene Details
Chromosome: chr4
Transcript: TCONS_00008846
Biotype: transcript isomorph
Gene id: XLOC_003616
Gene Name: XLOC_003616
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-223-3p
Sequence: ugucaguuugucaaauacccca
MirBase ID: MIMAT0000280
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
448-457
0.051
0
C12orf36
hsa-miR-223-3p
0.920
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000532841
Biotype: lincRNA
Gene id: ENSG00000180861
Gene Name: C12orf36
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-223-3p
Sequence: ugucaguuugucaaauacccca
MirBase ID: MIMAT0000280
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
334-357
0.051
1
RP11-418J17.1
hsa-miR-223-3p
0.920
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000418015
Biotype: antisense
Gene id: ENSG00000231365
Gene Name: RP11-418J17.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-223-3p
Sequence: ugucaguuugucaaauacccca
MirBase ID: MIMAT0000280
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1482-1503
0.051
3
XLOC_001929
hsa-miR-223-3p
0.920
mTTBlnEmP

Gene Details
Chromosome: chr2
Transcript: TCONS_00004094
Biotype: transcript isomorph
Gene id: XLOC_001929
Gene Name: XLOC_001929
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-223-3p
Sequence: ugucaguuugucaaauacccca
MirBase ID: MIMAT0000280
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
670-686
0.051
1
XLOC_013278
hsa-miR-223-3p
0.919
mTTBlnEmP

Gene Details
Chromosome: chr19
Transcript: TCONS_00027248
Biotype: transcript isomorph
Gene id: XLOC_013278
Gene Name: XLOC_013278
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
- Colon Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-223-3p
Sequence: ugucaguuugucaaauacccca
MirBase ID: MIMAT0000280
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
59-73
0.039
0
6mer
544-567
0.012
0
LINC00094
hsa-miR-223-3p
0.919
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000603928
Biotype: antisense
Gene id: ENSG00000235106
Gene Name: LINC00094
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
HMEpC Mammary Gland Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-223-3p
Sequence: ugucaguuugucaaauacccca
MirBase ID: MIMAT0000280
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
4058-4080
0.044
9
7mer
1524-1536
0.004
0
7mer
1589-1613
0.002
0
6mer
2636-2660
0.001
1
RP11-73B2.7
hsa-miR-223-3p
0.919
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000593633
Biotype: retained_intron
Gene id: ENSG00000268181
Gene Name: RP11-73B2.7
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-223-3p
Sequence: ugucaguuugucaaauacccca
MirBase ID: MIMAT0000280
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
122-142
0.039
0
7mer
1507-1516
0.007
1
6mer
722-726
0.003
1
6mer
1137-1155
0.002
1
Funded by:
We have placed cookies on your device to help make this website and the services we offer better. By using this site, you agree to the use of cookies. Learn more
I accept