LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-223-3p


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Gene
miRNA
Score
DIANA Links
CTB-33O18.3
hsa-miR-223-3p
0.949
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000519897
Biotype: antisense
Gene id: ENSG00000253955
Gene Name: CTB-33O18.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-223-3p
Sequence: ugucaguuugucaaauacccca
MirBase ID: MIMAT0000280
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
243-252
0.058
1
XLOC_005522
hsa-miR-223-3p
0.947
mTTBlnEmP

Gene Details
Chromosome: chr6
Transcript: TCONS_00011403
Biotype: transcript isomorph
Gene id: XLOC_005522
Gene Name: XLOC_005522
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
- Ovary Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-223-3p
Sequence: ugucaguuugucaaauacccca
MirBase ID: MIMAT0000280
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
156-181
0.051
1
6mer
229-246
0.007
3
GRM7-AS3
hsa-miR-223-3p
0.944
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000412629
Biotype: lincRNA
Gene id: ENSG00000226258
Gene Name: GRM7-AS3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-223-3p
Sequence: ugucaguuugucaaauacccca
MirBase ID: MIMAT0000280
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
253-263
0.048
2
6mer
283-303
0.005
2
6mer
300-325
0.004
2
RP11-545A16.1
hsa-miR-223-3p
0.944
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000569644
Biotype: antisense
Gene id: ENSG00000261250
Gene Name: RP11-545A16.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-223-3p
Sequence: ugucaguuugucaaauacccca
MirBase ID: MIMAT0000280
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
28-53
0.026
0
9mer
1087-1097
0.025
1
7mer
2244-2261
0.004
1
6mer
1692-1704
0.002
4
GRM7-AS3
hsa-miR-223-3p
0.944
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000445675
Biotype: lincRNA
Gene id: ENSG00000226258
Gene Name: GRM7-AS3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-223-3p
Sequence: ugucaguuugucaaauacccca
MirBase ID: MIMAT0000280
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
711-721
0.048
2
6mer
741-761
0.005
2
6mer
758-783
0.004
2
RP11-136K7.3
hsa-miR-223-3p
0.943
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000518473
Biotype: lincRNA
Gene id: ENSG00000253985
Gene Name: RP11-136K7.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-223-3p
Sequence: ugucaguuugucaaauacccca
MirBase ID: MIMAT0000280
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
277-287
0.057
2
RP11-855C21.1
hsa-miR-223-3p
0.942
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000524042
Biotype: sense_intronic
Gene id: ENSG00000253104
Gene Name: RP11-855C21.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-223-3p
Sequence: ugucaguuugucaaauacccca
MirBase ID: MIMAT0000280
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
277-287
0.056
3
XLOC_011484
hsa-miR-223-3p
0.941
mTTBlnEmP

Gene Details
Chromosome: chr15
Transcript: TCONS_00023685
Biotype: transcript isomorph
Gene id: XLOC_011484
Gene Name: XLOC_011484
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Kidney Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-223-3p
Sequence: ugucaguuugucaaauacccca
MirBase ID: MIMAT0000280
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2723-2743
0.040
0
6mer
3212-3235
0.016
0
AC097662.2
hsa-miR-223-3p
0.941
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000437673
Biotype: antisense
Gene id: ENSG00000236432
Gene Name: AC097662.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-223-3p
Sequence: ugucaguuugucaaauacccca
MirBase ID: MIMAT0000280
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
553-577
0.051
2
6mer
132-148
0.005
2
RP11-2O17.2
hsa-miR-223-3p
0.941
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000507264
Biotype: antisense
Gene id: ENSG00000248529
Gene Name: RP11-2O17.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-223-3p
Sequence: ugucaguuugucaaauacccca
MirBase ID: MIMAT0000280
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
560-575
0.049
3
6mer
25-45
0.006
3
RP11-483F11.7
hsa-miR-223-3p
0.941
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000452391
Biotype: antisense
Gene id: ENSG00000229278
Gene Name: RP11-483F11.7
UCSC graphic:
Expression:
  Cell Line Tissue Category
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-223-3p
Sequence: ugucaguuugucaaauacccca
MirBase ID: MIMAT0000280
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
111-131
0.056
0
LINC00469
hsa-miR-223-3p
0.941
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000544677
Biotype: lincRNA
Gene id: ENSG00000177338
Gene Name: LINC00469
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-223-3p
Sequence: ugucaguuugucaaauacccca
MirBase ID: MIMAT0000280
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
94-118
0.056
3
RP11-411B10.2
hsa-miR-223-3p
0.940
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000591211
Biotype: antisense
Gene id: ENSG00000267150
Gene Name: RP11-411B10.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-223-3p
Sequence: ugucaguuugucaaauacccca
MirBase ID: MIMAT0000280
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
217-229
0.034
0
7mer
278-304
0.022
0
DEAR
hsa-miR-223-3p
0.939
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000605147
Biotype: antisense
Gene id: ENSG00000270751
Gene Name: DEAR
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-223-3p
Sequence: ugucaguuugucaaauacccca
MirBase ID: MIMAT0000280
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
34-45
0.055
3
XLOC_003503
hsa-miR-223-3p
0.937
mTTBlnEmP

Gene Details
Chromosome: chr4
Transcript: TCONS_00007384
Biotype: transcript isomorph
Gene id: XLOC_003503
Gene Name: XLOC_003503
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Brain Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-223-3p
Sequence: ugucaguuugucaaauacccca
MirBase ID: MIMAT0000280
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
1107-1129
0.034
1
7mer
950-963
0.010
1
7mer
502-512
0.010
0
EFCAB14-AS1
hsa-miR-223-3p
0.937
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000442839
Biotype: antisense
Gene id: ENSG00000228237
Gene Name: EFCAB14-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-223-3p
Sequence: ugucaguuugucaaauacccca
MirBase ID: MIMAT0000280
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
381-390
0.055
4
EFCAB14-AS1
hsa-miR-223-3p
0.937
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000418985
Biotype: antisense
Gene id: ENSG00000228237
Gene Name: EFCAB14-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-223-3p
Sequence: ugucaguuugucaaauacccca
MirBase ID: MIMAT0000280
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
373-382
0.055
4
XLOC_009990
hsa-miR-223-3p
0.929
mTTBlnEmP

Gene Details
Chromosome: chr12
Transcript: TCONS_00020685
Biotype: transcript isomorph
Gene id: XLOC_009990
Gene Name: XLOC_009990
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Brain Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-223-3p
Sequence: ugucaguuugucaaauacccca
MirBase ID: MIMAT0000280
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
808-815
0.044
1
7mer
1428-1436
0.009
Not Conserved
RP11-554F20.1
hsa-miR-223-3p
0.929
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000427039
Biotype: lincRNA
Gene id: ENSG00000237461
Gene Name: RP11-554F20.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-223-3p
Sequence: ugucaguuugucaaauacccca
MirBase ID: MIMAT0000280
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
968-981
0.053
8
RP11-73B2.7
hsa-miR-223-3p
0.928
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000616616
Biotype: lincRNA
Gene id: ENSG00000268181
Gene Name: RP11-73B2.7
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-223-3p
Sequence: ugucaguuugucaaauacccca
MirBase ID: MIMAT0000280
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
118-138
0.040
0
7mer
919-928
0.010
1
6mer
549-567
0.003
1
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