LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-223-3p


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Gene
miRNA
Score
DIANA Links
RP11-95P13.2
hsa-miR-223-3p
0.962
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000458443
Biotype: lincRNA
Gene id: ENSG00000238232
Gene Name: RP11-95P13.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-223-3p
Sequence: ugucaguuugucaaauacccca
MirBase ID: MIMAT0000280
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
43-62
0.063
2
XLOC_002499
hsa-miR-223-3p
0.962
mTTBlnEmP

Gene Details
Chromosome: chr2
Transcript: TCONS_00004596
Biotype: transcript isomorph
Gene id: XLOC_002499
Gene Name: XLOC_002499
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Heart Normal/Primary


miRNA Details
Name: hsa-miR-223-3p
Sequence: ugucaguuugucaaauacccca
MirBase ID: MIMAT0000280
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
189-215
0.038
9
8mer
212-225
0.026
2
PHKA1-AS1
hsa-miR-223-3p
0.961
mTTBlnEmP

Gene Details
Chromosome: X
Transcript: ENST00000420998
Biotype: antisense
Gene id: ENSG00000231944
Gene Name: PHKA1-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-223-3p
Sequence: ugucaguuugucaaauacccca
MirBase ID: MIMAT0000280
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
300-322
0.056
4
6mer
171-182
0.007
2
XLOC_002900
hsa-miR-223-3p
0.961
mTTBlnEmP

Gene Details
Chromosome: chr3
Transcript: TCONS_00006294
Biotype: transcript isomorph
Gene id: XLOC_002900
Gene Name: XLOC_002900
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-223-3p
Sequence: ugucaguuugucaaauacccca
MirBase ID: MIMAT0000280
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
2827-2839
0.044
2
8mer
276-297
0.019
1
TSIX
hsa-miR-223-3p
0.960
mTTBlnEmP

Gene Details
Chromosome: X
Transcript: ENST00000604411
Biotype: lincRNA
Gene id: ENSG00000270641
Gene Name: TSIX
UCSC graphic:
Expression:
  Cell Line Tissue Category
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-223-3p
Sequence: ugucaguuugucaaauacccca
MirBase ID: MIMAT0000280
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
5828-5849
0.029
0
8mer
36426-36432
0.017
1
7mer
36495-36501
0.008
0
6mer
34168-34179
0.002
4
6mer
3291-3300
0.002
2
6mer
8876-8890
0.002
0
6mer
17163-17180
0.001
1
6mer
9598-9615
0.001
0
6mer
12166-12188
0.001
Not Conserved
RP11-354E23.5
hsa-miR-223-3p
0.959
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000608259
Biotype: sense_intronic
Gene id: ENSG00000272627
Gene Name: RP11-354E23.5
UCSC graphic:
Expression:
  Cell Line Tissue Category
HeLa Cervix Cancer/Malignant


miRNA Details
Name: hsa-miR-223-3p
Sequence: ugucaguuugucaaauacccca
MirBase ID: MIMAT0000280
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
60-74
0.062
1
RP11-397A16.3
hsa-miR-223-3p
0.958
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000585985
Biotype: lincRNA
Gene id: ENSG00000267172
Gene Name: RP11-397A16.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-223-3p
Sequence: ugucaguuugucaaauacccca
MirBase ID: MIMAT0000280
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
705-715
0.044
1
6mer
362-380
0.012
1
6mer
492-503
0.006
0
XLOC_003973
hsa-miR-223-3p
0.957
mTTBlnEmP

Gene Details
Chromosome: chr4
Transcript: TCONS_00008501
Biotype: transcript isomorph
Gene id: XLOC_003973
Gene Name: XLOC_003973
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Kidney Normal/Primary


miRNA Details
Name: hsa-miR-223-3p
Sequence: ugucaguuugucaaauacccca
MirBase ID: MIMAT0000280
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
434-456
0.061
0
XLOC_006072
hsa-miR-223-3p
0.956
mTTBlnEmP

Gene Details
Chromosome: chr7
Transcript: TCONS_00014121
Biotype: transcript isomorph
Gene id: XLOC_006072
Gene Name: XLOC_006072
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-223-3p
Sequence: ugucaguuugucaaauacccca
MirBase ID: MIMAT0000280
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
2100-2111
0.058
0
6mer
320-347
0.003
0
RP11-2O17.2
hsa-miR-223-3p
0.955
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000505623
Biotype: antisense
Gene id: ENSG00000248529
Gene Name: RP11-2O17.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-223-3p
Sequence: ugucaguuugucaaauacccca
MirBase ID: MIMAT0000280
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2056-2071
0.047
3
7mer
288-293
0.011
1
6mer
180-194
0.003
0
LOC284581
hsa-miR-223-3p
0.955
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: NR_046098.1
Biotype: lincRNA
Gene id: NR_046098.1 (gene)
Gene Name: LOC284581
UCSC graphic: -
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-223-3p
Sequence: ugucaguuugucaaauacccca
MirBase ID: MIMAT0000280
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1872-1882
0.049
1
6mer
918-940
0.008
1
6mer
723-746
0.004
0
RP11-47L3.1
hsa-miR-223-3p
0.955
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000591886
Biotype: lincRNA
Gene id: ENSG00000267364
Gene Name: RP11-47L3.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-223-3p
Sequence: ugucaguuugucaaauacccca
MirBase ID: MIMAT0000280
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
373-391
0.061
0
RP11-700J17.2
hsa-miR-223-3p
0.955
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000610267
Biotype: antisense
Gene id: ENSG00000272936
Gene Name: RP11-700J17.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-223-3p
Sequence: ugucaguuugucaaauacccca
MirBase ID: MIMAT0000280
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
212-224
0.061
0
XLOC_006242
hsa-miR-223-3p
0.954
mTTBlnEmP

Gene Details
Chromosome: chr7
Transcript: TCONS_00014209
Biotype: transcript isomorph
Gene id: XLOC_006242
Gene Name: XLOC_006242
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
- Liver Normal/Primary
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-223-3p
Sequence: ugucaguuugucaaauacccca
MirBase ID: MIMAT0000280
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1227-1243
0.060
1
RP5-907D15.4
hsa-miR-223-3p
0.953
mTTBlnEmP

Gene Details
Chromosome: 20
Transcript: ENST00000598340
Biotype: lincRNA
Gene id: ENSG00000268941
Gene Name: RP5-907D15.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-223-3p
Sequence: ugucaguuugucaaauacccca
MirBase ID: MIMAT0000280
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
803-819
0.060
1
AC096669.1
hsa-miR-223-3p
0.953
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000443833
Biotype: lincRNA
Gene id: ENSG00000225588
Gene Name: AC096669.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-223-3p
Sequence: ugucaguuugucaaauacccca
MirBase ID: MIMAT0000280
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
127-151
0.060
0
LINC01354
hsa-miR-223-3p
0.951
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000435574
Biotype: lincRNA
Gene id: ENSG00000231768
Gene Name: LINC01354
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-223-3p
Sequence: ugucaguuugucaaauacccca
MirBase ID: MIMAT0000280
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
65-74
0.056
3
6mer
2328-2340
0.003
1
STARD4-AS1
hsa-miR-223-3p
0.951
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000500779
Biotype: antisense
Gene id: ENSG00000246859
Gene Name: STARD4-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-223-3p
Sequence: ugucaguuugucaaauacccca
MirBase ID: MIMAT0000280
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
5263-5276
0.028
1
8mer
5398-5414
0.014
1
8mer
4084-4103
0.009
1
7mer
1280-1298
0.009
0
RP11-358B23.5
hsa-miR-223-3p
0.950
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000592536
Biotype: antisense
Gene id: ENSG00000267758
Gene Name: RP11-358B23.5
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-223-3p
Sequence: ugucaguuugucaaauacccca
MirBase ID: MIMAT0000280
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
263-268
0.034
8
7mer
196-211
0.024
5
RP11-1038A11.1
hsa-miR-223-3p
0.949
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000538430
Biotype: lincRNA
Gene id: ENSG00000255983
Gene Name: RP11-1038A11.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-223-3p
Sequence: ugucaguuugucaaauacccca
MirBase ID: MIMAT0000280
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
61-84
0.056
1
6mer
573-586
0.003
1
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