LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-223-3p


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Gene
miRNA
Score
DIANA Links
LINC00654
hsa-miR-223-3p
0.976
mTTBlnEmP

Gene Details
Chromosome: 20
Transcript: NR_015406.1
Biotype: lincRNA
Gene id: NR_015406.1 (gene)
Gene Name: LINC00654
UCSC graphic: -
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-223-3p
Sequence: ugucaguuugucaaauacccca
MirBase ID: MIMAT0000280
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
3557-3580
0.071
2
RP11-140I24.1
hsa-miR-223-3p
0.975
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000555721
Biotype: lincRNA
Gene id: ENSG00000258779
Gene Name: RP11-140I24.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-223-3p
Sequence: ugucaguuugucaaauacccca
MirBase ID: MIMAT0000280
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
239-251
0.049
5
8mer
365-391
0.018
0
6mer
531-536
0.004
1
RP11-388C12.5
hsa-miR-223-3p
0.974
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000570919
Biotype: lincRNA
Gene id: ENSG00000263321
Gene Name: RP11-388C12.5
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-223-3p
Sequence: ugucaguuugucaaauacccca
MirBase ID: MIMAT0000280
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
245-257
0.070
2
XLOC_003615
hsa-miR-223-3p
0.973
mTTBlnEmP

Gene Details
Chromosome: chr4
Transcript: TCONS_00008172
Biotype: transcript isomorph
Gene id: XLOC_003615
Gene Name: XLOC_003615
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Brain Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-223-3p
Sequence: ugucaguuugucaaauacccca
MirBase ID: MIMAT0000280
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1679-1702
0.061
5
7mer
639-651
0.008
2
RP4-753D4.2
hsa-miR-223-3p
0.973
mTTBlnEmP

Gene Details
Chromosome: 20
Transcript: ENST00000412519
Biotype: antisense
Gene id: ENSG00000227599
Gene Name: RP4-753D4.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-223-3p
Sequence: ugucaguuugucaaauacccca
MirBase ID: MIMAT0000280
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
259-272
0.069
6
AC105402.4
hsa-miR-223-3p
0.973
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000608822
Biotype: antisense
Gene id: ENSG00000231079
Gene Name: AC105402.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-223-3p
Sequence: ugucaguuugucaaauacccca
MirBase ID: MIMAT0000280
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
663-678
0.069
3
LINC01301
hsa-miR-223-3p
0.972
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000530725
Biotype: lincRNA
Gene id: ENSG00000251396
Gene Name: LINC01301
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Brain Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Breast Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
Fibroblasts Lung Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-223-3p
Sequence: ugucaguuugucaaauacccca
MirBase ID: MIMAT0000280
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
9-25
0.069
1
AC002117.1
hsa-miR-223-3p
0.972
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000589950
Biotype: antisense
Gene id: ENSG00000224505
Gene Name: AC002117.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
HeLa Cervix Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-223-3p
Sequence: ugucaguuugucaaauacccca
MirBase ID: MIMAT0000280
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
350-366
0.069
3
RP11-180O5.2
hsa-miR-223-3p
0.972
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000413943
Biotype: antisense
Gene id: ENSG00000226088
Gene Name: RP11-180O5.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-223-3p
Sequence: ugucaguuugucaaauacccca
MirBase ID: MIMAT0000280
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
484-495
0.069
3
RP11-403N16.3
hsa-miR-223-3p
0.972
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000565707
Biotype: lincRNA
Gene id: ENSG00000260564
Gene Name: RP11-403N16.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-223-3p
Sequence: ugucaguuugucaaauacccca
MirBase ID: MIMAT0000280
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
2311-2323
0.062
7
7mer
1077-1085
0.006
2
XLOC_000281
hsa-miR-223-3p
0.972
mTTBlnEmP

Gene Details
Chromosome: chr1
Transcript: TCONS_00001015
Biotype: transcript isomorph
Gene id: XLOC_000281
Gene Name: XLOC_000281
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
- Colon Normal/Primary
- Lung Normal/Primary
- Ovary Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-223-3p
Sequence: ugucaguuugucaaauacccca
MirBase ID: MIMAT0000280
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
13-33
0.068
1
AC022007.5
hsa-miR-223-3p
0.971
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000383808
Biotype: lincRNA
Gene id: ENSG00000206567
Gene Name: AC022007.5
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-223-3p
Sequence: ugucaguuugucaaauacccca
MirBase ID: MIMAT0000280
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
248-265
0.055
0
8mer
706-724
0.008
Not Conserved
6mer
985-1007
0.003
0
6mer
1170-1196
0.002
Not Conserved
GRM7-AS3
hsa-miR-223-3p
0.970
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000458713
Biotype: lincRNA
Gene id: ENSG00000226258
Gene Name: GRM7-AS3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-223-3p
Sequence: ugucaguuugucaaauacccca
MirBase ID: MIMAT0000280
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
75-85
0.058
2
6mer
105-125
0.006
2
6mer
122-147
0.004
2
ITGA9-AS1
hsa-miR-223-3p
0.970
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000438136
Biotype: antisense
Gene id: ENSG00000235257
Gene Name: ITGA9-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-223-3p
Sequence: ugucaguuugucaaauacccca
MirBase ID: MIMAT0000280
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
2-15
0.064
0
6mer
142-156
0.004
1
LINC00616
hsa-miR-223-3p
0.969
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000513895
Biotype: lincRNA
Gene id: ENSG00000248307
Gene Name: LINC00616
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-223-3p
Sequence: ugucaguuugucaaauacccca
MirBase ID: MIMAT0000280
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
7-14
0.067
1
CTD-3185P2.1
hsa-miR-223-3p
0.966
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000565387
Biotype: antisense
Gene id: ENSG00000261351
Gene Name: CTD-3185P2.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-223-3p
Sequence: ugucaguuugucaaauacccca
MirBase ID: MIMAT0000280
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2-13
0.052
2
7mer
1163-1187
0.005
1
6mer
88-106
0.003
2
6mer
663-680
0.003
3
6mer
196-216
0.002
0
AP000221.1
hsa-miR-223-3p
0.965
mTTBlnEmP

Gene Details
Chromosome: 21
Transcript: ENST00000419694
Biotype: lincRNA
Gene id: ENSG00000229962
Gene Name: AP000221.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-223-3p
Sequence: ugucaguuugucaaauacccca
MirBase ID: MIMAT0000280
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
257-277
0.058
1
6mer
762-787
0.007
1
XLOC_003203
hsa-miR-223-3p
0.963
mTTBlnEmP

Gene Details
Chromosome: chr3
Transcript: TCONS_00006587
Biotype: transcript isomorph
Gene id: XLOC_003203
Gene Name: XLOC_003203
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
- Heart Normal/Primary
- Prostate Normal/Primary


miRNA Details
Name: hsa-miR-223-3p
Sequence: ugucaguuugucaaauacccca
MirBase ID: MIMAT0000280
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
73-80
0.037
0
7mer
114-132
0.027
1
AC069394.1
hsa-miR-223-3p
0.962
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000446520
Biotype: lincRNA
Gene id: ENSG00000224231
Gene Name: AC069394.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-223-3p
Sequence: ugucaguuugucaaauacccca
MirBase ID: MIMAT0000280
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
108-135
0.063
1
XLOC_007645
hsa-miR-223-3p
0.962
mTTBlnEmP

Gene Details
Chromosome: chr9
Transcript: TCONS_00016269
Biotype: transcript isomorph
Gene id: XLOC_007645
Gene Name: XLOC_007645
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Lung Normal/Primary
- Ovary Normal/Primary


miRNA Details
Name: hsa-miR-223-3p
Sequence: ugucaguuugucaaauacccca
MirBase ID: MIMAT0000280
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
234-252
0.063
3
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