LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-223-3p


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Gene
miRNA
Score
DIANA Links
CTC-524C5.5
hsa-miR-223-3p
0.990
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000571506
Biotype: lincRNA
Gene id: ENSG00000262099
Gene Name: CTC-524C5.5
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-223-3p
Sequence: ugucaguuugucaaauacccca
MirBase ID: MIMAT0000280
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
370-389
0.078
0
6mer
292-315
0.007
4
XLOC_013690
hsa-miR-223-3p
0.989
mTTBlnEmP

Gene Details
Chromosome: chr20
Transcript: TCONS_00028641
Biotype: transcript isomorph
Gene id: XLOC_013690
Gene Name: XLOC_013690
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Placenta Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-223-3p
Sequence: ugucaguuugucaaauacccca
MirBase ID: MIMAT0000280
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1009-1018
0.023
1
7mer
956-965
0.020
1
7mer
1143-1152
0.019
0
7mer
994-1012
0.015
0
6mer
747-756
0.007
1
XLOC_006976
hsa-miR-223-3p
0.989
mTTBlnEmP

Gene Details
Chromosome: chr8
Transcript: TCONS_00014909
Biotype: transcript isomorph
Gene id: XLOC_006976
Gene Name: XLOC_006976
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
- Brain Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
- Lung Normal/Primary
A549 Lung Cancer/Malignant
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-223-3p
Sequence: ugucaguuugucaaauacccca
MirBase ID: MIMAT0000280
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
434-441
0.066
0
8mer
737-743
0.017
0
XLOC_004384
hsa-miR-223-3p
0.988
mTTBlnEmP

Gene Details
Chromosome: chr5
Transcript: TCONS_00009962
Biotype: transcript isomorph
Gene id: XLOC_004384
Gene Name: XLOC_004384
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Kidney Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-223-3p
Sequence: ugucaguuugucaaauacccca
MirBase ID: MIMAT0000280
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
512-534
0.079
1
6mer
247-267
0.004
0
AP001347.6
hsa-miR-223-3p
0.988
mTTBlnEmP

Gene Details
Chromosome: 21
Transcript: ENST00000428809
Biotype: antisense
Gene id: ENSG00000224905
Gene Name: AP001347.6
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-223-3p
Sequence: ugucaguuugucaaauacccca
MirBase ID: MIMAT0000280
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
828-851
0.082
1
PCAT19
hsa-miR-223-3p
0.988
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000599801
Biotype: lincRNA
Gene id: ENSG00000267107
Gene Name: PCAT19
UCSC graphic:
Expression:
  Cell Line Tissue Category
HUVEC Blood Vessel Normal/Primary


miRNA Details
Name: hsa-miR-223-3p
Sequence: ugucaguuugucaaauacccca
MirBase ID: MIMAT0000280
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
329-343
0.082
1
AP001347.6
hsa-miR-223-3p
0.987
mTTBlnEmP

Gene Details
Chromosome: 21
Transcript: ENST00000432621
Biotype: antisense
Gene id: ENSG00000224905
Gene Name: AP001347.6
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-223-3p
Sequence: ugucaguuugucaaauacccca
MirBase ID: MIMAT0000280
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
580-603
0.081
1
AC002117.1
hsa-miR-223-3p
0.985
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000452741
Biotype: antisense
Gene id: ENSG00000224505
Gene Name: AC002117.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
HeLa Cervix Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-223-3p
Sequence: ugucaguuugucaaauacccca
MirBase ID: MIMAT0000280
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
132-148
0.080
3
XLOC_001621
hsa-miR-223-3p
0.985
mTTBlnEmP

Gene Details
Chromosome: chr2
Transcript: TCONS_00003817
Biotype: transcript isomorph
Gene id: XLOC_001621
Gene Name: XLOC_001621
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-223-3p
Sequence: ugucaguuugucaaauacccca
MirBase ID: MIMAT0000280
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
322-337
0.026
0
8mer
830-838
0.023
0
6mer
540-550
0.012
1
6mer
334-347
0.009
1
6mer
24-34
0.006
0
6mer
547-568
0.004
0
ERVK3-1
hsa-miR-223-3p
0.985
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000590505
Biotype: retained_intron
Gene id: ENSG00000142396
Gene Name: ERVK3-1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-223-3p
Sequence: ugucaguuugucaaauacccca
MirBase ID: MIMAT0000280
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
3616-3633
0.041
0
9mer
2726-2752
0.038
0
LINC01116
hsa-miR-223-3p
0.983
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000295549
Biotype: lincRNA
Gene id: ENSG00000163364
Gene Name: LINC01116
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
HREpiC Kidney Normal/Primary
Fibroblasts Lung Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
- Lymph Node Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-223-3p
Sequence: ugucaguuugucaaauacccca
MirBase ID: MIMAT0000280
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
278-305
0.059
6
8mer
584-590
0.014
3
6mer
210-218
0.005
2
RP11-401P9.5
hsa-miR-223-3p
0.983
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000570241
Biotype: antisense
Gene id: ENSG00000260249
Gene Name: RP11-401P9.5
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-223-3p
Sequence: ugucaguuugucaaauacccca
MirBase ID: MIMAT0000280
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1063-1081
0.069
1
6mer
654-672
0.004
1
6mer
91-104
0.004
1
FAM230A
hsa-miR-223-3p
0.981
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000610338
Biotype: antisense
Gene id: ENSG00000188280
Gene Name: FAM230A
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-223-3p
Sequence: ugucaguuugucaaauacccca
MirBase ID: MIMAT0000280
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1776-1791
0.073
0
6mer
475-495
0.002
0
LINC00554
hsa-miR-223-3p
0.981
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000564841
Biotype: antisense
Gene id: ENSG00000260738
Gene Name: LINC00554
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-223-3p
Sequence: ugucaguuugucaaauacccca
MirBase ID: MIMAT0000280
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
1968-1977
0.073
9
6mer
2066-2079
0.003
0
RP3-323A16.1
hsa-miR-223-3p
0.979
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000623959
Biotype: antisense
Gene id: ENSG00000279184
Gene Name: RP3-323A16.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-223-3p
Sequence: ugucaguuugucaaauacccca
MirBase ID: MIMAT0000280
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
27060-27076
0.017
1
8mer
40483-40494
0.006
1
7mer
12283-12295
0.005
1
7mer
24468-24480
0.005
1
7mer
26189-26213
0.004
1
6mer
53924-53942
0.004
1
7mer
24793-24803
0.003
1
6mer
22757-22761
0.003
2
7mer
11654-11659
0.002
0
6mer
52626-52630
0.002
1
6mer
49916-49937
0.002
1
6mer
16084-16097
0.002
2
6mer
37451-37459
0.002
4
6mer
5331-5344
0.002
0
7mer
17120-17132
0.002
1
7mer
5460-5475
0.001
0
6mer
42206-42224
0.001
1
6mer
30205-30217
0.001
0
6mer
45522-45542
0.001
2
6mer
45640-45658
0.001
3
7mer
27060-27082
0.001
0
6mer
31566-31593
0.001
1
6mer
4015-4025
0.001
0
6mer
41658-41672
0.001
1
6mer
24946-24956
0.001
0
6mer
50990-51008
0.001
0
6mer
52662-52683
0.001
1
LINC01410
hsa-miR-223-3p
0.978
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000424345
Biotype: lincRNA
Gene id: ENSG00000238113
Gene Name: LINC01410
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HepG2 Liver Cancer/Malignant


miRNA Details
Name: hsa-miR-223-3p
Sequence: ugucaguuugucaaauacccca
MirBase ID: MIMAT0000280
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
934-944
0.042
0
6mer
332-340
0.019
0
6mer
477-494
0.012
0
RP11-278I4.2
hsa-miR-223-3p
0.978
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000518362
Biotype: antisense
Gene id: ENSG00000254278
Gene Name: RP11-278I4.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-223-3p
Sequence: ugucaguuugucaaauacccca
MirBase ID: MIMAT0000280
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
907-921
0.062
7
6mer
255-272
0.006
7
6mer
467-475
0.005
2
LINC01116
hsa-miR-223-3p
0.977
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: NR_040001.2
Biotype: lincRNA
Gene id: NR_040001.2 (gene)
Gene Name: LINC01116
UCSC graphic: -
Expression:
  Cell Line Tissue Category
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HREpiC Kidney Normal/Primary
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-223-3p
Sequence: ugucaguuugucaaauacccca
MirBase ID: MIMAT0000280
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
286-313
0.052
6
8mer
592-598
0.015
3
6mer
218-226
0.005
2
LINC00654
hsa-miR-223-3p
0.977
mTTBlnEmP

Gene Details
Chromosome: 20
Transcript: ENST00000379053
Biotype: lincRNA
Gene id: ENSG00000205181
Gene Name: LINC00654
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-223-3p
Sequence: ugucaguuugucaaauacccca
MirBase ID: MIMAT0000280
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
6062-6085
0.065
2
7mer
515-529
0.003
0
7mer
493-506
0.003
0
6mer
1317-1327
0.001
0
RP11-297L17.4
hsa-miR-223-3p
0.977
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000565229
Biotype: lincRNA
Gene id: ENSG00000261261
Gene Name: RP11-297L17.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-223-3p
Sequence: ugucaguuugucaaauacccca
MirBase ID: MIMAT0000280
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
882-902
0.072
8
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