LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-223-3p


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Gene
miRNA
Score
DIANA Links
ZNF561-AS1
hsa-miR-223-3p
0.998
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000586943
Biotype: retained_intron
Gene id: ENSG00000267106
Gene Name: ZNF561-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-223-3p
Sequence: ugucaguuugucaaauacccca
MirBase ID: MIMAT0000280
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
1205-1230
0.116
0
KB-68A7.2
hsa-miR-223-3p
0.998
mTTBlnEmP

Gene Details
Chromosome: 21
Transcript: ENST00000622854
Biotype: lincRNA
Gene id: ENSG00000277352
Gene Name: KB-68A7.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-223-3p
Sequence: ugucaguuugucaaauacccca
MirBase ID: MIMAT0000280
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
87-103
0.115
1
XLOC_005906
hsa-miR-223-3p
0.998
mTTBlnEmP

Gene Details
Chromosome: chr6
Transcript: TCONS_00011606
Biotype: transcript isomorph
Gene id: XLOC_005906
Gene Name: XLOC_005906
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-223-3p
Sequence: ugucaguuugucaaauacccca
MirBase ID: MIMAT0000280
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
641-655
0.110
0
XLOC_001718
hsa-miR-223-3p
0.997
mTTBlnEmP

Gene Details
Chromosome: chr2
Transcript: TCONS_00003913
Biotype: transcript isomorph
Gene id: XLOC_001718
Gene Name: XLOC_001718
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Colon Normal/Primary
- Heart Normal/Primary
- Skeletal Muscle Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-223-3p
Sequence: ugucaguuugucaaauacccca
MirBase ID: MIMAT0000280
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
222-241
0.106
8
RP11-298D21.2
hsa-miR-223-3p
0.997
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000563342
Biotype: antisense
Gene id: ENSG00000259914
Gene Name: RP11-298D21.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-223-3p
Sequence: ugucaguuugucaaauacccca
MirBase ID: MIMAT0000280
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
135-148
0.105
8
LOC284581
hsa-miR-223-3p
0.997
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: NR_046097.1
Biotype: lincRNA
Gene id: NR_046097.1 (gene)
Gene Name: LOC284581
UCSC graphic: -
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-223-3p
Sequence: ugucaguuugucaaauacccca
MirBase ID: MIMAT0000280
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2224-2234
0.049
1
8mer
23-49
0.045
0
6mer
1270-1292
0.006
1
6mer
1075-1098
0.003
0
RP13-977J11.2
hsa-miR-223-3p
0.996
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000538731
Biotype: lincRNA
Gene id: ENSG00000256576
Gene Name: RP13-977J11.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-223-3p
Sequence: ugucaguuugucaaauacccca
MirBase ID: MIMAT0000280
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
136-161
0.100
2
RP11-275I14.4
hsa-miR-223-3p
0.996
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000440540
Biotype: antisense
Gene id: ENSG00000234478
Gene Name: RP11-275I14.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-223-3p
Sequence: ugucaguuugucaaauacccca
MirBase ID: MIMAT0000280
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
180-205
0.071
5
9mer
466-483
0.025
0
6mer
315-329
0.004
2
PWRN2
hsa-miR-223-3p
0.995
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: NR_026647.1
Biotype: lincRNA
Gene id: NR_026647.1 (gene)
Gene Name: PWRN2
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-223-3p
Sequence: ugucaguuugucaaauacccca
MirBase ID: MIMAT0000280
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
359-366
0.085
1
8mer
2790-2802
0.009
0
6mer
2072-2097
0.004
1
FAM230B
hsa-miR-223-3p
0.995
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000424410
Biotype: lincRNA
Gene id: ENSG00000215498
Gene Name: FAM230B
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-223-3p
Sequence: ugucaguuugucaaauacccca
MirBase ID: MIMAT0000280
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1768-1783
0.093
0
6mer
469-495
0.004
0
XLOC_003171
hsa-miR-223-3p
0.995
mTTBlnEmP

Gene Details
Chromosome: chr3
Transcript: TCONS_00006548
Biotype: transcript isomorph
Gene id: XLOC_003171
Gene Name: XLOC_003171
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-223-3p
Sequence: ugucaguuugucaaauacccca
MirBase ID: MIMAT0000280
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
249-258
0.098
0
PWRN2
hsa-miR-223-3p
0.995
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000567246
Biotype: lincRNA
Gene id: ENSG00000260551
Gene Name: PWRN2
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Kidney Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-223-3p
Sequence: ugucaguuugucaaauacccca
MirBase ID: MIMAT0000280
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
361-368
0.084
1
8mer
2792-2804
0.009
0
6mer
2074-2099
0.004
1
CTD-2104P17.2
hsa-miR-223-3p
0.995
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000578640
Biotype: antisense
Gene id: ENSG00000264932
Gene Name: CTD-2104P17.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-223-3p
Sequence: ugucaguuugucaaauacccca
MirBase ID: MIMAT0000280
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
69-77
0.080
1
7mer
331-346
0.016
1
RP11-550I24.2
hsa-miR-223-3p
0.994
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000494885
Biotype: antisense
Gene id: ENSG00000243176
Gene Name: RP11-550I24.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-223-3p
Sequence: ugucaguuugucaaauacccca
MirBase ID: MIMAT0000280
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
166-191
0.094
5
RP11-550I24.2
hsa-miR-223-3p
0.993
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000475102
Biotype: antisense
Gene id: ENSG00000243176
Gene Name: RP11-550I24.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-223-3p
Sequence: ugucaguuugucaaauacccca
MirBase ID: MIMAT0000280
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
283-308
0.092
5
CASC6
hsa-miR-223-3p
0.993
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000437768
Biotype: lincRNA
Gene id: ENSG00000224944
Gene Name: CASC6
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-223-3p
Sequence: ugucaguuugucaaauacccca
MirBase ID: MIMAT0000280
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
422-432
0.091
8
SMC5-AS1
hsa-miR-223-3p
0.992
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000594708
Biotype: antisense
Gene id: ENSG00000268364
Gene Name: SMC5-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-223-3p
Sequence: ugucaguuugucaaauacccca
MirBase ID: MIMAT0000280
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
16-25
0.089
2
MIR181A2HG
hsa-miR-223-3p
0.991
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000429139
Biotype: antisense
Gene id: ENSG00000224020
Gene Name: MIR181A2HG
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
A549 Lung Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-223-3p
Sequence: ugucaguuugucaaauacccca
MirBase ID: MIMAT0000280
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
37-51
0.088
8
MIR181A2HG
hsa-miR-223-3p
0.990
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: NR_038975.1
Biotype: antisense
Gene id: NR_038975.1 (gene)
Gene Name: MIR181A2HG
UCSC graphic: -
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-223-3p
Sequence: ugucaguuugucaaauacccca
MirBase ID: MIMAT0000280
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
68-82
0.086
8
XLOC_011424
hsa-miR-223-3p
0.990
mTTBlnEmP

Gene Details
Chromosome: chr15
Transcript: TCONS_00023625
Biotype: transcript isomorph
Gene id: XLOC_011424
Gene Name: XLOC_011424
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Kidney Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-223-3p
Sequence: ugucaguuugucaaauacccca
MirBase ID: MIMAT0000280
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
350-366
0.086
6
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