LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-223-3p


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Gene
miRNA
Score
DIANA Links
CSMD2-AS1
hsa-miR-223-3p
0.887
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000414868
Biotype: antisense
Gene id: ENSG00000231163
Gene Name: CSMD2-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-223-3p
Sequence: ugucaguuugucaaauacccca
MirBase ID: MIMAT0000280
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
182-208
0.044
2
CSMD2-AS1
hsa-miR-223-3p
0.887
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000432447
Biotype: antisense
Gene id: ENSG00000231163
Gene Name: CSMD2-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-223-3p
Sequence: ugucaguuugucaaauacccca
MirBase ID: MIMAT0000280
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
182-208
0.044
2
RP11-71N10.1
hsa-miR-223-3p
0.886
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000467198
Biotype: lincRNA
Gene id: ENSG00000239922
Gene Name: RP11-71N10.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-223-3p
Sequence: ugucaguuugucaaauacccca
MirBase ID: MIMAT0000280
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
1927-1937
0.044
4
AC006548.28
hsa-miR-223-3p
0.886
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000623130
Biotype: sense_overlapping
Gene id: ENSG00000280156
Gene Name: AC006548.28
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-223-3p
Sequence: ugucaguuugucaaauacccca
MirBase ID: MIMAT0000280
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
4495-4504
0.007
0
8mer
20446-20460
0.004
0
7mer
1560-1572
0.004
0
7mer
20614-20626
0.004
1
7mer
7011-7036
0.003
1
7mer
3918-3934
0.002
0
7mer
80271-80295
0.002
0
6mer
30802-30817
0.002
1
6mer
5436-5443
0.002
3
6mer
37263-37289
0.002
3
6mer
73937-73950
0.002
1
6mer
4986-5011
0.002
1
6mer
79622-79640
0.002
0
6mer
47462-47479
0.001
Not Conserved
6mer
42489-42497
0.001
0
6mer
8209-8233
0.001
2
6mer
36140-36165
0.001
1
6mer
13957-13979
0.001
0
6mer
62454-62462
0.001
Not Conserved
6mer
14830-14848
0.001
1
6mer
45639-45661
0.001
Not Conserved
RP11-797A18.3
hsa-miR-223-3p
0.885
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000560446
Biotype: lincRNA
Gene id: ENSG00000259652
Gene Name: RP11-797A18.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-223-3p
Sequence: ugucaguuugucaaauacccca
MirBase ID: MIMAT0000280
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
197-214
0.024
1
8mer
182-200
0.020
0
LINC01014
hsa-miR-223-3p
0.885
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000455307
Biotype: sense_intronic
Gene id: ENSG00000223941
Gene Name: LINC01014
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-223-3p
Sequence: ugucaguuugucaaauacccca
MirBase ID: MIMAT0000280
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
477-494
0.044
2
LINC01014
hsa-miR-223-3p
0.885
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000441018
Biotype: sense_intronic
Gene id: ENSG00000223941
Gene Name: LINC01014
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-223-3p
Sequence: ugucaguuugucaaauacccca
MirBase ID: MIMAT0000280
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
259-276
0.044
2
RP11-367B6.2
hsa-miR-223-3p
0.884
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000445111
Biotype: sense_intronic
Gene id: ENSG00000228280
Gene Name: RP11-367B6.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-223-3p
Sequence: ugucaguuugucaaauacccca
MirBase ID: MIMAT0000280
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
399-417
0.044
5
LINC00890
hsa-miR-223-3p
0.883
mTTBlnEmP

Gene Details
Chromosome: X
Transcript: ENST00000563467
Biotype: lincRNA
Gene id: ENSG00000260802
Gene Name: LINC00890
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-223-3p
Sequence: ugucaguuugucaaauacccca
MirBase ID: MIMAT0000280
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
56-71
0.044
0
LINC01014
hsa-miR-223-3p
0.882
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000436432
Biotype: sense_intronic
Gene id: ENSG00000223941
Gene Name: LINC01014
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-223-3p
Sequence: ugucaguuugucaaauacccca
MirBase ID: MIMAT0000280
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
470-487
0.044
2
LRRC75A-AS1
hsa-miR-223-3p
0.879
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000497774
Biotype: retained_intron
Gene id: ENSG00000175061
Gene Name: LRRC75A-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
HMEpC Mammary Gland Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-223-3p
Sequence: ugucaguuugucaaauacccca
MirBase ID: MIMAT0000280
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
267-278
0.026
8
7mer
798-809
0.017
8
RP11-406A20.4
hsa-miR-223-3p
0.878
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000426593
Biotype: lincRNA
Gene id: ENSG00000227555
Gene Name: RP11-406A20.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-223-3p
Sequence: ugucaguuugucaaauacccca
MirBase ID: MIMAT0000280
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
44-63
0.015
0
7mer
974-984
0.007
1
6mer
112-134
0.006
1
7mer
2565-2576
0.005
0
6mer
150-169
0.005
1
7mer
920-947
0.004
0
6mer
1408-1432
0.001
0
XLOC_010776
hsa-miR-223-3p
0.877
mTTBlnEmP

Gene Details
Chromosome: chr14
Transcript: TCONS_00022935
Biotype: transcript isomorph
Gene id: XLOC_010776
Gene Name: XLOC_010776
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Brain Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-223-3p
Sequence: ugucaguuugucaaauacccca
MirBase ID: MIMAT0000280
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
95-117
0.022
6
7mer
2409-2431
0.021
2
NAV2-AS3
hsa-miR-223-3p
0.877
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000534036
Biotype: antisense
Gene id: ENSG00000254542
Gene Name: NAV2-AS3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-223-3p
Sequence: ugucaguuugucaaauacccca
MirBase ID: MIMAT0000280
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
329-342
0.026
2
8mer
98-106
0.017
1
LINC00950
hsa-miR-223-3p
0.876
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: NR_024006.1
Biotype: lincRNA
Gene id: NR_024006.1 (gene)
Gene Name: LINC00950
UCSC graphic: -
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-223-3p
Sequence: ugucaguuugucaaauacccca
MirBase ID: MIMAT0000280
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
3980-4003
0.015
0
7mer
507-523
0.011
0
8mer
2479-2495
0.007
1
7mer
1704-1726
0.006
1
6mer
1364-1375
0.002
2
6mer
2117-2127
0.002
2
RP11-666F17.1
hsa-miR-223-3p
0.875
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000414098
Biotype: antisense
Gene id: ENSG00000234428
Gene Name: RP11-666F17.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-223-3p
Sequence: ugucaguuugucaaauacccca
MirBase ID: MIMAT0000280
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
762-775
0.043
1
LINC01484
hsa-miR-223-3p
0.874
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000521128
Biotype: lincRNA
Gene id: ENSG00000253686
Gene Name: LINC01484
UCSC graphic:
Expression:
  Cell Line Tissue Category
HeLa Cervix Cancer/Malignant
HepG2 Liver Cancer/Malignant


miRNA Details
Name: hsa-miR-223-3p
Sequence: ugucaguuugucaaauacccca
MirBase ID: MIMAT0000280
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
959-982
0.037
0
6mer
1446-1464
0.004
2
6mer
926-938
0.001
Not Conserved
CTD-2013N24.2
hsa-miR-223-3p
0.874
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000597366
Biotype: antisense
Gene id: ENSG00000244513
Gene Name: CTD-2013N24.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
HeLa Cervix Cancer/Malignant
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-223-3p
Sequence: ugucaguuugucaaauacccca
MirBase ID: MIMAT0000280
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
642-652
0.042
1
XLOC_012421
hsa-miR-223-3p
0.873
mTTBlnEmP

Gene Details
Chromosome: chr17
Transcript: TCONS_00025591
Biotype: transcript isomorph
Gene id: XLOC_012421
Gene Name: XLOC_012421
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-223-3p
Sequence: ugucaguuugucaaauacccca
MirBase ID: MIMAT0000280
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
142-158
0.042
1
CTB-174O21.2
hsa-miR-223-3p
0.873
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000600716
Biotype: antisense
Gene id: ENSG00000269487
Gene Name: CTB-174O21.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-223-3p
Sequence: ugucaguuugucaaauacccca
MirBase ID: MIMAT0000280
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
498-524
0.042
1
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