LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-221-3p


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Gene
miRNA
Score
DIANA Links
RP11-867G23.3
hsa-miR-221-3p
0.763
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000501708
Biotype: lincRNA
Gene id: ENSG00000245156
Gene Name: RP11-867G23.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-221-3p
Sequence: agcuacauugucugcuggguuuc
MirBase ID: MIMAT0000278
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2345-2364
0.023
7
6mer
2577-2594
0.005
6
6mer
1725-1744
0.001
1
6mer
1543-1562
0.001
1
RP11-350A1.2
hsa-miR-221-3p
0.762
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000565943
Biotype: lincRNA
Gene id: ENSG00000260959
Gene Name: RP11-350A1.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-221-3p
Sequence: agcuacauugucugcuggguuuc
MirBase ID: MIMAT0000278
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
278-294
0.030
0
LL22NC03-22D1.1
hsa-miR-221-3p
0.762
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000624601
Biotype: lincRNA
Gene id: ENSG00000279003
Gene Name: LL22NC03-22D1.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-221-3p
Sequence: agcuacauugucugcuggguuuc
MirBase ID: MIMAT0000278
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
14392-14410
0.011
0
8mer
23047-23069
0.006
1
7mer
5068-5094
0.004
0
6mer
1578-1593
0.003
6
8mer
14603-14628
0.002
0
7mer
12935-12961
0.002
2
7mer
7031-7045
0.001
1
6mer
22125-22142
0.001
0
TTTY15
hsa-miR-221-3p
0.761
mTTBlnEmP

Gene Details
Chromosome: Y
Transcript: NR_001545.2
Biotype: lincRNA
Gene id: NR_001545.2 (gene)
Gene Name: TTTY15
UCSC graphic: -
Expression:
  Cell Line Tissue Category
HUVEC Blood Vessel Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-221-3p
Sequence: agcuacauugucugcuggguuuc
MirBase ID: MIMAT0000278
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1411-1433
0.030
0
NFE4
hsa-miR-221-3p
0.761
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000420058
Biotype: antisense
Gene id: ENSG00000230257
Gene Name: NFE4
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary


miRNA Details
Name: hsa-miR-221-3p
Sequence: agcuacauugucugcuggguuuc
MirBase ID: MIMAT0000278
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
788-807
0.030
1
DISC1FP1
hsa-miR-221-3p
0.761
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000569513
Biotype: retained_intron
Gene id: ENSG00000261645
Gene Name: DISC1FP1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-221-3p
Sequence: agcuacauugucugcuggguuuc
MirBase ID: MIMAT0000278
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
272-286
0.030
1
LOC100289495
hsa-miR-221-3p
0.760
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: NR_040022.1
Biotype: lincRNA
Gene id: NR_040022.1 (gene)
Gene Name: LOC100289495
UCSC graphic: -
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-221-3p
Sequence: agcuacauugucugcuggguuuc
MirBase ID: MIMAT0000278
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
3118-3139
0.030
0
RP4-686C3.7
hsa-miR-221-3p
0.759
mTTBlnEmP

Gene Details
Chromosome: 20
Transcript: ENST00000418739
Biotype: antisense
Gene id: ENSG00000228293
Gene Name: RP4-686C3.7
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Brain Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary


miRNA Details
Name: hsa-miR-221-3p
Sequence: agcuacauugucugcuggguuuc
MirBase ID: MIMAT0000278
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
71-92
0.029
0
AC012370.3
hsa-miR-221-3p
0.759
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000605491
Biotype: lincRNA
Gene id: ENSG00000234255
Gene Name: AC012370.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-221-3p
Sequence: agcuacauugucugcuggguuuc
MirBase ID: MIMAT0000278
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
507-528
0.011
0
7mer
588-614
0.010
1
6mer
518-544
0.005
3
6mer
255-274
0.004
1
RP5-898I4.1
hsa-miR-221-3p
0.757
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000623740
Biotype: sense_overlapping
Gene id: ENSG00000280395
Gene Name: RP5-898I4.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-221-3p
Sequence: agcuacauugucugcuggguuuc
MirBase ID: MIMAT0000278
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
651-670
0.015
1
7mer
3551-3565
0.010
0
6mer
269-288
0.003
1
6mer
1154-1176
0.001
0
6mer
1768-1787
0.001
0
RP11-815J21.1
hsa-miR-221-3p
0.756
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000558757
Biotype: sense_intronic
Gene id: ENSG00000259453
Gene Name: RP11-815J21.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-221-3p
Sequence: agcuacauugucugcuggguuuc
MirBase ID: MIMAT0000278
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
466-488
0.029
2
RP11-847H18.2
hsa-miR-221-3p
0.755
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000501954
Biotype: antisense
Gene id: ENSG00000245482
Gene Name: RP11-847H18.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-221-3p
Sequence: agcuacauugucugcuggguuuc
MirBase ID: MIMAT0000278
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
1922-1946
0.029
1
CTA-292E10.9
hsa-miR-221-3p
0.755
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000623127
Biotype: antisense
Gene id: ENSG00000280111
Gene Name: CTA-292E10.9
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-221-3p
Sequence: agcuacauugucugcuggguuuc
MirBase ID: MIMAT0000278
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
19883-19900
0.010
0
6mer
4377-4402
0.002
1
7mer
4451-4474
0.002
0
6mer
9901-9918
0.002
0
6mer
2435-2452
0.002
2
8mer
1827-1849
0.001
Not Conserved
6mer
524-542
0.001
0
6mer
6199-6218
0.001
1
6mer
24084-24103
0.001
0
6mer
942-961
0.001
1
6mer
5582-5601
0.001
1
6mer
8742-8761
0.001
0
6mer
5767-5786
0.001
0
6mer
22210-22229
0.001
1
6mer
14360-14382
0.001
0
6mer
20331-20354
0.001
0
6mer
17149-17168
0.001
0
CTC-260E6.6
hsa-miR-221-3p
0.754
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000592022
Biotype: antisense
Gene id: ENSG00000267383
Gene Name: CTC-260E6.6
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
- Kidney Normal/Primary
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
Fibroblasts Lung Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
- Lymph Node Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-221-3p
Sequence: agcuacauugucugcuggguuuc
MirBase ID: MIMAT0000278
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
1163-1185
0.018
1
6mer
683-701
0.011
1
XLOC_004457
hsa-miR-221-3p
0.754
mTTBlnEmP

Gene Details
Chromosome: chr5
Transcript: TCONS_00010010
Biotype: transcript isomorph
Gene id: XLOC_004457
Gene Name: XLOC_004457
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
- Brain Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Liver Normal/Primary
HepG2 Liver Cancer/Malignant
Fibroblasts Lung Normal/Primary
- Lung Normal/Primary
A549 Lung Cancer/Malignant
- Lymph Node Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-221-3p
Sequence: agcuacauugucugcuggguuuc
MirBase ID: MIMAT0000278
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2403-2429
0.020
1
7mer
460-472
0.009
0
RP11-34P13.13
hsa-miR-221-3p
0.754
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000484859
Biotype: antisense
Gene id: ENSG00000241860
Gene Name: RP11-34P13.13
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
- Liver Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
Fibroblasts Lung Normal/Primary
A549 Lung Cancer/Malignant
- Lung Normal/Primary
- Lymph Node Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-221-3p
Sequence: agcuacauugucugcuggguuuc
MirBase ID: MIMAT0000278
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
4717-4736
0.011
1
6mer
4164-4190
0.010
1
6mer
364-383
0.004
0
6mer
2946-2963
0.002
0
6mer
1550-1569
0.002
0
RP13-539F13.3
hsa-miR-221-3p
0.754
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000512833
Biotype: lincRNA
Gene id: ENSG00000250406
Gene Name: RP13-539F13.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-221-3p
Sequence: agcuacauugucugcuggguuuc
MirBase ID: MIMAT0000278
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2152-2169
0.025
3
6mer
2316-2339
0.004
1
XLOC_011329
hsa-miR-221-3p
0.753
mTTBlnEmP

Gene Details
Chromosome: chr15
Transcript: TCONS_00023483
Biotype: transcript isomorph
Gene id: XLOC_011329
Gene Name: XLOC_011329
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Liver Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-221-3p
Sequence: agcuacauugucugcuggguuuc
MirBase ID: MIMAT0000278
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
246-265
0.011
1
7mer
276-297
0.008
1
7mer
320-339
0.006
1
6mer
387-406
0.004
1
XLOC_006809
hsa-miR-221-3p
0.753
mTTBlnEmP

Gene Details
Chromosome: chr8
Transcript: TCONS_00014492
Biotype: transcript isomorph
Gene id: XLOC_006809
Gene Name: XLOC_006809
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Heart Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-221-3p
Sequence: agcuacauugucugcuggguuuc
MirBase ID: MIMAT0000278
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1618-1635
0.020
Not Conserved
6mer
2241-2256
0.005
1
8mer
1711-1727
0.004
0
XLOC_003641
hsa-miR-221-3p
0.753
mTTBlnEmP

Gene Details
Chromosome: chr4
Transcript: TCONS_00008193
Biotype: transcript isomorph
Gene id: XLOC_003641
Gene Name: XLOC_003641
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Kidney Normal/Primary
- Liver Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-221-3p
Sequence: agcuacauugucugcuggguuuc
MirBase ID: MIMAT0000278
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
417-433
0.024
1
6mer
204-223
0.004
1
6mer
2439-2458
0.001
1
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