LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-221-3p


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Gene
miRNA
Score
DIANA Links
AC011525.4
hsa-miR-221-3p
0.786
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000592788
Biotype: lincRNA
Gene id: ENSG00000267465
Gene Name: AC011525.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-221-3p
Sequence: agcuacauugucugcuggguuuc
MirBase ID: MIMAT0000278
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
447-470
0.021
10
7mer
441-459
0.011
4
AF127936.7
hsa-miR-221-3p
0.785
mTTBlnEmP

Gene Details
Chromosome: 21
Transcript: ENST00000593619
Biotype: lincRNA
Gene id: ENSG00000235609
Gene Name: AF127936.7
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-221-3p
Sequence: agcuacauugucugcuggguuuc
MirBase ID: MIMAT0000278
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
148-166
0.032
0
RP11-362F19.1
hsa-miR-221-3p
0.785
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000506645
Biotype: lincRNA
Gene id: ENSG00000248810
Gene Name: RP11-362F19.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant


miRNA Details
Name: hsa-miR-221-3p
Sequence: agcuacauugucugcuggguuuc
MirBase ID: MIMAT0000278
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
345-370
0.032
1
LINC01255
hsa-miR-221-3p
0.785
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000589566
Biotype: lincRNA
Gene id: ENSG00000267252
Gene Name: LINC01255
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-221-3p
Sequence: agcuacauugucugcuggguuuc
MirBase ID: MIMAT0000278
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
328-347
0.032
1
CTD-2510F5.4
hsa-miR-221-3p
0.783
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000577678
Biotype: antisense
Gene id: ENSG00000265415
Gene Name: CTD-2510F5.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-221-3p
Sequence: agcuacauugucugcuggguuuc
MirBase ID: MIMAT0000278
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
10-36
0.032
1
AF067845.1
hsa-miR-221-3p
0.782
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000567210
Biotype: lincRNA
Gene id: ENSG00000260721
Gene Name: AF067845.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-221-3p
Sequence: agcuacauugucugcuggguuuc
MirBase ID: MIMAT0000278
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
966-981
0.027
1
6mer
61-84
0.005
1
AC069155.1
hsa-miR-221-3p
0.780
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000452736
Biotype: antisense
Gene id: ENSG00000233581
Gene Name: AC069155.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-221-3p
Sequence: agcuacauugucugcuggguuuc
MirBase ID: MIMAT0000278
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
483-497
0.031
4
XLOC_008418
hsa-miR-221-3p
0.780
mTTBlnEmP

Gene Details
Chromosome: chr10
Transcript: TCONS_00018142
Biotype: transcript isomorph
Gene id: XLOC_008418
Gene Name: XLOC_008418
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-221-3p
Sequence: agcuacauugucugcuggguuuc
MirBase ID: MIMAT0000278
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
195-213
0.031
1
PRMT5-AS1
hsa-miR-221-3p
0.779
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000424245
Biotype: antisense
Gene id: ENSG00000237054
Gene Name: PRMT5-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-221-3p
Sequence: agcuacauugucugcuggguuuc
MirBase ID: MIMAT0000278
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
497-519
0.009
1
7mer
383-405
0.006
1
7mer
477-504
0.006
1
6mer
1187-1212
0.004
3
7mer
882-907
0.003
2
6mer
681-700
0.002
0
6mer
755-781
0.001
1
XLOC_013703
hsa-miR-221-3p
0.778
mTTBlnEmP

Gene Details
Chromosome: chr20
Transcript: TCONS_00028028
Biotype: transcript isomorph
Gene id: XLOC_013703
Gene Name: XLOC_013703
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Kidney Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Liver Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-221-3p
Sequence: agcuacauugucugcuggguuuc
MirBase ID: MIMAT0000278
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
604-618
0.018
0
7mer
1419-1428
0.013
0
SRD5A3-AS1
hsa-miR-221-3p
0.778
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000599135
Biotype: antisense
Gene id: ENSG00000249700
Gene Name: SRD5A3-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-221-3p
Sequence: agcuacauugucugcuggguuuc
MirBase ID: MIMAT0000278
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
594-612
0.021
1
8mer
575-600
0.011
Not Conserved
XLOC_002749
hsa-miR-221-3p
0.777
mTTBlnEmP

Gene Details
Chromosome: chr3
Transcript: TCONS_00006148
Biotype: transcript isomorph
Gene id: XLOC_002749
Gene Name: XLOC_002749
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
- Breast Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-221-3p
Sequence: agcuacauugucugcuggguuuc
MirBase ID: MIMAT0000278
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2332-2348
0.022
0
6mer
2654-2673
0.004
0
6mer
1916-1938
0.003
0
6mer
2905-2924
0.003
0
MLIP-AS1
hsa-miR-221-3p
0.777
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000587216
Biotype: antisense
Gene id: ENSG00000235050
Gene Name: MLIP-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-221-3p
Sequence: agcuacauugucugcuggguuuc
MirBase ID: MIMAT0000278
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
819-833
0.031
0
AP000295.10
hsa-miR-221-3p
0.776
mTTBlnEmP

Gene Details
Chromosome: 21
Transcript: ENST00000609556
Biotype: lincRNA
Gene id: ENSG00000272659
Gene Name: AP000295.10
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-221-3p
Sequence: agcuacauugucugcuggguuuc
MirBase ID: MIMAT0000278
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
559-579
0.031
1
AC073326.3
hsa-miR-221-3p
0.775
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000451832
Biotype: sense_intronic
Gene id: ENSG00000228540
Gene Name: AC073326.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-221-3p
Sequence: agcuacauugucugcuggguuuc
MirBase ID: MIMAT0000278
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
332-344
0.031
1
XLOC_002888
hsa-miR-221-3p
0.775
mTTBlnEmP

Gene Details
Chromosome: chr3
Transcript: TCONS_00006284
Biotype: transcript isomorph
Gene id: XLOC_002888
Gene Name: XLOC_002888
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
K562 Blood Cancer/Malignant
- Brain Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Breast Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Kidney Normal/Primary
- Liver Normal/Primary
A549 Lung Cancer/Malignant
- Lung Normal/Primary
- Lymph Node Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-221-3p
Sequence: agcuacauugucugcuggguuuc
MirBase ID: MIMAT0000278
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1436-1456
0.030
Not Conserved
6mer
722-739
0.001
0
XLOC_009401
hsa-miR-221-3p
0.770
mTTBlnEmP

Gene Details
Chromosome: chr11
Transcript: TCONS_00019598
Biotype: transcript isomorph
Gene id: XLOC_009401
Gene Name: XLOC_009401
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Breast Normal/Primary
- Kidney Normal/Primary
- Ovary Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-221-3p
Sequence: agcuacauugucugcuggguuuc
MirBase ID: MIMAT0000278
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
190-211
0.030
1
LINC00636
hsa-miR-221-3p
0.769
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000494231
Biotype: lincRNA
Gene id: ENSG00000240423
Gene Name: LINC00636
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-221-3p
Sequence: agcuacauugucugcuggguuuc
MirBase ID: MIMAT0000278
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1030-1051
0.030
1
MIR3663HG
hsa-miR-221-3p
0.768
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000419373
Biotype: lincRNA
Gene id: ENSG00000234474
Gene Name: MIR3663HG
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-221-3p
Sequence: agcuacauugucugcuggguuuc
MirBase ID: MIMAT0000278
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
75-87
0.030
1
RP11-567J20.3
hsa-miR-221-3p
0.767
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000521359
Biotype: lincRNA
Gene id: ENSG00000253140
Gene Name: RP11-567J20.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-221-3p
Sequence: agcuacauugucugcuggguuuc
MirBase ID: MIMAT0000278
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
37-57
0.024
0
6mer
442-469
0.006
1
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