LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-221-3p


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Gene
miRNA
Score
DIANA Links
TSG1
hsa-miR-221-3p
0.819
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: NR_015362.1
Biotype: lincRNA
Gene id: NR_015362.1 (gene)
Gene Name: TSG1
UCSC graphic: -
Expression:
  Cell Line Tissue Category
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-221-3p
Sequence: agcuacauugucugcuggguuuc
MirBase ID: MIMAT0000278
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
3687-3700
0.020
0
7mer
477-496
0.009
0
8mer
3755-3777
0.005
1
6mer
1100-1119
0.001
1
RP11-6O2.4
hsa-miR-221-3p
0.819
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000566974
Biotype: antisense
Gene id: ENSG00000261054
Gene Name: RP11-6O2.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-221-3p
Sequence: agcuacauugucugcuggguuuc
MirBase ID: MIMAT0000278
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
334-357
0.029
Not Conserved
6mer
139-161
0.004
0
6mer
1374-1395
0.002
Not Conserved
WDFY3-AS2
hsa-miR-221-3p
0.817
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000451762
Biotype: antisense
Gene id: ENSG00000180769
Gene Name: WDFY3-AS2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-221-3p
Sequence: agcuacauugucugcuggguuuc
MirBase ID: MIMAT0000278
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
4940-4962
0.024
0
8mer
2942-2963
0.011
1
RP11-510C10.4
hsa-miR-221-3p
0.816
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000565735
Biotype: lincRNA
Gene id: ENSG00000261213
Gene Name: RP11-510C10.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-221-3p
Sequence: agcuacauugucugcuggguuuc
MirBase ID: MIMAT0000278
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
122-144
0.035
0
RP11-407B7.1
hsa-miR-221-3p
0.815
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000449350
Biotype: lincRNA
Gene id: ENSG00000230102
Gene Name: RP11-407B7.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-221-3p
Sequence: agcuacauugucugcuggguuuc
MirBase ID: MIMAT0000278
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
463-488
0.035
1
XLOC_005392
hsa-miR-221-3p
0.815
mTTBlnEmP

Gene Details
Chromosome: chr6
Transcript: TCONS_00011181
Biotype: transcript isomorph
Gene id: XLOC_005392
Gene Name: XLOC_005392
UCSC graphic: -
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
- Brain Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
- Kidney Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Prostate Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-221-3p
Sequence: agcuacauugucugcuggguuuc
MirBase ID: MIMAT0000278
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
8189-8202
0.020
0
7mer
477-496
0.009
0
8mer
8257-8279
0.005
1
6mer
1100-1119
0.001
1
AC002398.13
hsa-miR-221-3p
0.815
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000589397
Biotype: antisense
Gene id: ENSG00000267049
Gene Name: AC002398.13
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-221-3p
Sequence: agcuacauugucugcuggguuuc
MirBase ID: MIMAT0000278
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
281-302
0.032
Not Conserved
6mer
161-180
0.003
1
XLOC_001719
hsa-miR-221-3p
0.814
mTTBlnEmP

Gene Details
Chromosome: chr2
Transcript: TCONS_00003915
Biotype: transcript isomorph
Gene id: XLOC_001719
Gene Name: XLOC_001719
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-221-3p
Sequence: agcuacauugucugcuggguuuc
MirBase ID: MIMAT0000278
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
529-549
0.033
3
6mer
542-556
0.002
0
RP11-708H21.4
hsa-miR-221-3p
0.813
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000575159
Biotype: lincRNA
Gene id: ENSG00000262973
Gene Name: RP11-708H21.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-221-3p
Sequence: agcuacauugucugcuggguuuc
MirBase ID: MIMAT0000278
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
768-789
0.028
0
7mer
892-914
0.007
0
XLOC_007154
hsa-miR-221-3p
0.812
mTTBlnEmP

Gene Details
Chromosome: chr8
Transcript: TCONS_00015092
Biotype: transcript isomorph
Gene id: XLOC_007154
Gene Name: XLOC_007154
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-221-3p
Sequence: agcuacauugucugcuggguuuc
MirBase ID: MIMAT0000278
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
68-84
0.035
Not Conserved
RP4-671O14.7
hsa-miR-221-3p
0.809
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000624215
Biotype: antisense
Gene id: ENSG00000280011
Gene Name: RP4-671O14.7
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-221-3p
Sequence: agcuacauugucugcuggguuuc
MirBase ID: MIMAT0000278
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
16409-16428
0.018
Not Conserved
7mer
16032-16047
0.005
1
7mer
10809-10832
0.005
1
6mer
373-398
0.003
1
6mer
12249-12270
0.002
0
6mer
8880-8897
0.001
0
LINC01215
hsa-miR-221-3p
0.807
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000607746
Biotype: lincRNA
Gene id: ENSG00000271856
Gene Name: LINC01215
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-221-3p
Sequence: agcuacauugucugcuggguuuc
MirBase ID: MIMAT0000278
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2323-2339
0.030
0
6mer
1907-1929
0.004
0
AF131215.4
hsa-miR-221-3p
0.806
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000531549
Biotype: sense_intronic
Gene id: ENSG00000254556
Gene Name: AF131215.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-221-3p
Sequence: agcuacauugucugcuggguuuc
MirBase ID: MIMAT0000278
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1607-1632
0.030
0
6mer
805-823
0.004
1
RP1-193H18.2
hsa-miR-221-3p
0.806
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000588041
Biotype: lincRNA
Gene id: ENSG00000267194
Gene Name: RP1-193H18.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-221-3p
Sequence: agcuacauugucugcuggguuuc
MirBase ID: MIMAT0000278
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
1646-1665
0.034
0
LINC00158
hsa-miR-221-3p
0.806
mTTBlnEmP

Gene Details
Chromosome: 21
Transcript: ENST00000332587
Biotype: lincRNA
Gene id: ENSG00000185433
Gene Name: LINC00158
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-221-3p
Sequence: agcuacauugucugcuggguuuc
MirBase ID: MIMAT0000278
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
292-317
0.025
0
7mer
1351-1368
0.009
2
LINC00158
hsa-miR-221-3p
0.806
mTTBlnEmP

Gene Details
Chromosome: 21
Transcript: ENST00000441013
Biotype: lincRNA
Gene id: ENSG00000185433
Gene Name: LINC00158
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-221-3p
Sequence: agcuacauugucugcuggguuuc
MirBase ID: MIMAT0000278
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
292-317
0.025
0
7mer
1255-1272
0.009
2
RP11-717H13.1
hsa-miR-221-3p
0.805
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000512241
Biotype: lincRNA
Gene id: ENSG00000248339
Gene Name: RP11-717H13.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-221-3p
Sequence: agcuacauugucugcuggguuuc
MirBase ID: MIMAT0000278
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
4379-4396
0.026
1
7mer
1296-1319
0.006
0
6mer
335-354
0.003
1
RP11-96D1.10
hsa-miR-221-3p
0.804
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000571975
Biotype: sense_overlapping
Gene id: ENSG00000263276
Gene Name: RP11-96D1.10
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant


miRNA Details
Name: hsa-miR-221-3p
Sequence: agcuacauugucugcuggguuuc
MirBase ID: MIMAT0000278
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
2316-2335
0.030
10
6mer
739-757
0.003
0
6mer
358-372
0.001
Not Conserved
RP11-488C13.7
hsa-miR-221-3p
0.803
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000553758
Biotype: lincRNA
Gene id: ENSG00000258610
Gene Name: RP11-488C13.7
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-221-3p
Sequence: agcuacauugucugcuggguuuc
MirBase ID: MIMAT0000278
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
239-249
0.034
10
XLOC_011256
hsa-miR-221-3p
0.800
mTTBlnEmP

Gene Details
Chromosome: chr15
Transcript: TCONS_00023409
Biotype: transcript isomorph
Gene id: XLOC_011256
Gene Name: XLOC_011256
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Kidney Normal/Primary
- Ovary Normal/Primary
- Testes Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-221-3p
Sequence: agcuacauugucugcuggguuuc
MirBase ID: MIMAT0000278
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
52-76
0.033
1
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