LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-221-3p


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Gene
miRNA
Score
DIANA Links
KB-1507C5.3
hsa-miR-221-3p
0.841
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000523791
Biotype: lincRNA
Gene id: ENSG00000253263
Gene Name: KB-1507C5.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-221-3p
Sequence: agcuacauugucugcuggguuuc
MirBase ID: MIMAT0000278
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
215-235
0.038
2
CPEB2-AS1
hsa-miR-221-3p
0.840
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000500394
Biotype: lincRNA
Gene id: ENSG00000247624
Gene Name: CPEB2-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-221-3p
Sequence: agcuacauugucugcuggguuuc
MirBase ID: MIMAT0000278
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1183-1199
0.038
1
CTD-2143L24.1
hsa-miR-221-3p
0.840
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000512976
Biotype: lincRNA
Gene id: ENSG00000249781
Gene Name: CTD-2143L24.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-221-3p
Sequence: agcuacauugucugcuggguuuc
MirBase ID: MIMAT0000278
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
93-118
0.038
2
AF127936.7
hsa-miR-221-3p
0.839
mTTBlnEmP

Gene Details
Chromosome: 21
Transcript: ENST00000432230
Biotype: lincRNA
Gene id: ENSG00000235609
Gene Name: AF127936.7
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-221-3p
Sequence: agcuacauugucugcuggguuuc
MirBase ID: MIMAT0000278
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
746-758
0.016
1
9mer
4903-4923
0.012
Not Conserved
8mer
2513-2531
0.009
0
6mer
2170-2186
0.001
1
XLOC_012406
hsa-miR-221-3p
0.839
mTTBlnEmP

Gene Details
Chromosome: chr17
Transcript: TCONS_00025579
Biotype: transcript isomorph
Gene id: XLOC_012406
Gene Name: XLOC_012406
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
- Breast Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-221-3p
Sequence: agcuacauugucugcuggguuuc
MirBase ID: MIMAT0000278
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
164-188
0.038
0
AC007128.1
hsa-miR-221-3p
0.838
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000424460
Biotype: antisense
Gene id: ENSG00000229970
Gene Name: AC007128.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-221-3p
Sequence: agcuacauugucugcuggguuuc
MirBase ID: MIMAT0000278
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
268-288
0.015
1
7mer
1747-1771
0.013
4
7mer
676-693
0.010
2
RP11-245A18.1
hsa-miR-221-3p
0.838
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000522087
Biotype: lincRNA
Gene id: ENSG00000254000
Gene Name: RP11-245A18.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-221-3p
Sequence: agcuacauugucugcuggguuuc
MirBase ID: MIMAT0000278
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
232-252
0.038
0
ASAP1-IT1
hsa-miR-221-3p
0.837
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: NR_002765.2
Biotype: sense
Gene id: NR_002765.2 (gene)
Gene Name: ASAP1-IT1
UCSC graphic: -
Expression:
  Cell Line Tissue Category
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-221-3p
Sequence: agcuacauugucugcuggguuuc
MirBase ID: MIMAT0000278
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
501-526
0.037
3
XLOC_004061
hsa-miR-221-3p
0.836
mTTBlnEmP

Gene Details
Chromosome: chr4
Transcript: TCONS_00008568
Biotype: transcript isomorph
Gene id: XLOC_004061
Gene Name: XLOC_004061
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
- Lymph Node Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-221-3p
Sequence: agcuacauugucugcuggguuuc
MirBase ID: MIMAT0000278
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
557-581
0.033
1
6mer
157-176
0.004
1
RP5-827L5.1
hsa-miR-221-3p
0.836
mTTBlnEmP

Gene Details
Chromosome: 20
Transcript: ENST00000441660
Biotype: lincRNA
Gene id: ENSG00000229606
Gene Name: RP5-827L5.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-221-3p
Sequence: agcuacauugucugcuggguuuc
MirBase ID: MIMAT0000278
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
98-117
0.030
0
7mer
43-62
0.007
0
XLOC_004254
hsa-miR-221-3p
0.831
mTTBlnEmP

Gene Details
Chromosome: chr5
Transcript: TCONS_00009838
Biotype: transcript isomorph
Gene id: XLOC_004254
Gene Name: XLOC_004254
UCSC graphic: -
Expression:
  Cell Line Tissue Category
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-221-3p
Sequence: agcuacauugucugcuggguuuc
MirBase ID: MIMAT0000278
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
56-79
0.032
0
7mer
316-340
0.005
0
XLOC_005209
hsa-miR-221-3p
0.829
mTTBlnEmP

Gene Details
Chromosome: chr6
Transcript: TCONS_00011744
Biotype: transcript isomorph
Gene id: XLOC_005209
Gene Name: XLOC_005209
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-221-3p
Sequence: agcuacauugucugcuggguuuc
MirBase ID: MIMAT0000278
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
541-557
0.036
0
AP000688.29
hsa-miR-221-3p
0.828
mTTBlnEmP

Gene Details
Chromosome: 21
Transcript: ENST00000422473
Biotype: lincRNA
Gene id: ENSG00000233393
Gene Name: AP000688.29
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-221-3p
Sequence: agcuacauugucugcuggguuuc
MirBase ID: MIMAT0000278
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2153-2169
0.036
0
RP11-119F7.5
hsa-miR-221-3p
0.825
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000562082
Biotype: sense_overlapping
Gene id: ENSG00000260400
Gene Name: RP11-119F7.5
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
HepG2 Liver Cancer/Malignant


miRNA Details
Name: hsa-miR-221-3p
Sequence: agcuacauugucugcuggguuuc
MirBase ID: MIMAT0000278
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2011-2025
0.036
10
RP11-563P16.1
hsa-miR-221-3p
0.824
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000533459
Biotype: lincRNA
Gene id: ENSG00000254987
Gene Name: RP11-563P16.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-221-3p
Sequence: agcuacauugucugcuggguuuc
MirBase ID: MIMAT0000278
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
421-441
0.036
0
LOC285692
hsa-miR-221-3p
0.824
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: NR_027112.2
Biotype: sense
Gene id: NR_027112.2 (gene)
Gene Name: LOC285692
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-221-3p
Sequence: agcuacauugucugcuggguuuc
MirBase ID: MIMAT0000278
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
83-108
0.036
2
RP11-861A13.4
hsa-miR-221-3p
0.823
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: NR_110030.1
Biotype: lincRNA
Gene id: NR_110030.1 (gene)
Gene Name: RP11-861A13.4
UCSC graphic: -
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-221-3p
Sequence: agcuacauugucugcuggguuuc
MirBase ID: MIMAT0000278
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2107-2123
0.032
0
6mer
1691-1713
0.004
0
XLOC_011484
hsa-miR-221-3p
0.822
mTTBlnEmP

Gene Details
Chromosome: chr15
Transcript: TCONS_00023685
Biotype: transcript isomorph
Gene id: XLOC_011484
Gene Name: XLOC_011484
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Kidney Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-221-3p
Sequence: agcuacauugucugcuggguuuc
MirBase ID: MIMAT0000278
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2703-2725
0.023
0
7mer
1954-1967
0.013
0
CTD-2143L24.1
hsa-miR-221-3p
0.822
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000511616
Biotype: lincRNA
Gene id: ENSG00000249781
Gene Name: CTD-2143L24.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-221-3p
Sequence: agcuacauugucugcuggguuuc
MirBase ID: MIMAT0000278
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
83-108
0.036
2
SRD5A3-AS1
hsa-miR-221-3p
0.820
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000598819
Biotype: antisense
Gene id: ENSG00000249700
Gene Name: SRD5A3-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-221-3p
Sequence: agcuacauugucugcuggguuuc
MirBase ID: MIMAT0000278
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
126-144
0.024
1
8mer
107-132
0.011
Not Conserved
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