LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-221-3p


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Gene
miRNA
Score
DIANA Links
XLOC_008878
hsa-miR-221-3p
0.875
mTTBlnEmP

Gene Details
Chromosome: chr10
Transcript: TCONS_00017740
Biotype: transcript isomorph
Gene id: XLOC_008878
Gene Name: XLOC_008878
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
- Brain Normal/Primary
- Colon Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-221-3p
Sequence: agcuacauugucugcuggguuuc
MirBase ID: MIMAT0000278
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
40-64
0.017
0
6mer
1580-1606
0.011
0
6mer
1242-1257
0.008
0
6mer
1222-1244
0.006
0
MIAT
hsa-miR-221-3p
0.872
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000616469
Biotype: lincRNA
Gene id: ENSG00000225783
Gene Name: MIAT
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
A549 Lung Cancer/Malignant
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-221-3p
Sequence: agcuacauugucugcuggguuuc
MirBase ID: MIMAT0000278
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
10005-10019
0.019
2
8mer
8886-8904
0.014
1
8mer
531-547
0.008
1
6mer
4459-4475
0.002
1
XLOC_009643
hsa-miR-221-3p
0.871
mTTBlnEmP

Gene Details
Chromosome: chr12
Transcript: TCONS_00020304
Biotype: transcript isomorph
Gene id: XLOC_009643
Gene Name: XLOC_009643
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-221-3p
Sequence: agcuacauugucugcuggguuuc
MirBase ID: MIMAT0000278
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
732-750
0.042
0
RP4-704D21.2
hsa-miR-221-3p
0.871
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000425109
Biotype: lincRNA
Gene id: ENSG00000234225
Gene Name: RP4-704D21.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Breast Normal/Primary
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-221-3p
Sequence: agcuacauugucugcuggguuuc
MirBase ID: MIMAT0000278
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
442-460
0.042
0
XLOC_009784
hsa-miR-221-3p
0.867
mTTBlnEmP

Gene Details
Chromosome: chr12
Transcript: TCONS_00021153
Biotype: transcript isomorph
Gene id: XLOC_009784
Gene Name: XLOC_009784
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Thyroid Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-221-3p
Sequence: agcuacauugucugcuggguuuc
MirBase ID: MIMAT0000278
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
91-112
0.041
1
RP11-351J23.1
hsa-miR-221-3p
0.867
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000400831
Biotype: lincRNA
Gene id: ENSG00000203688
Gene Name: RP11-351J23.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-221-3p
Sequence: agcuacauugucugcuggguuuc
MirBase ID: MIMAT0000278
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
12-33
0.041
0
XLOC_004431
hsa-miR-221-3p
0.867
mTTBlnEmP

Gene Details
Chromosome: chr5
Transcript: TCONS_00009999
Biotype: transcript isomorph
Gene id: XLOC_004431
Gene Name: XLOC_004431
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
- Heart Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Kidney Normal/Primary
- Lung Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-221-3p
Sequence: agcuacauugucugcuggguuuc
MirBase ID: MIMAT0000278
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
564-578
0.041
0
AC124789.1
hsa-miR-221-3p
0.866
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000619955
Biotype: retained_intron
Gene id: ENSG00000276170
Gene Name: AC124789.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
Fibroblasts Lung Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-221-3p
Sequence: agcuacauugucugcuggguuuc
MirBase ID: MIMAT0000278
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
22-43
0.041
0
LL22NC03-86G7.1
hsa-miR-221-3p
0.865
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000458178
Biotype: antisense
Gene id: ENSG00000224086
Gene Name: LL22NC03-86G7.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant


miRNA Details
Name: hsa-miR-221-3p
Sequence: agcuacauugucugcuggguuuc
MirBase ID: MIMAT0000278
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
37018-37037
0.018
1
6mer
24453-24475
0.005
13
6mer
18724-18746
0.002
7
7mer
24464-24483
0.002
10
6mer
28349-28363
0.001
1
6mer
11688-11707
0.001
1
6mer
26171-26193
0.001
1
6mer
27228-27253
0.001
1
6mer
16212-16228
0.001
1
6mer
10955-10974
0.001
1
6mer
29998-30023
0.001
1
6mer
18752-18768
0.001
11
6mer
2603-2622
0.001
1
6mer
10231-10254
0.001
1
7mer
26224-26243
0.001
0
6mer
13946-13965
0.001
0
KCNQ1OT1
hsa-miR-221-3p
0.864
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000597346
Biotype: antisense
Gene id: ENSG00000269821
Gene Name: KCNQ1OT1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
HepG2 Liver Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-221-3p
Sequence: agcuacauugucugcuggguuuc
MirBase ID: MIMAT0000278
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
11146-11162
0.006
0
8mer
22162-22184
0.006
0
8mer
63417-63437
0.005
0
7mer
89008-89035
0.004
1
7mer
75536-75555
0.003
0
6mer
67578-67600
0.002
1
7mer
82992-83010
0.002
0
6mer
52445-52459
0.002
2
6mer
35141-35158
0.002
0
7mer
20254-20272
0.002
0
6mer
5428-5454
0.002
1
7mer
80819-80840
0.001
1
6mer
72381-72400
0.001
Not Conserved
6mer
71025-71051
0.001
1
6mer
3830-3842
0.001
0
6mer
12173-12194
0.001
0
XLOC_013592
hsa-miR-221-3p
0.856
mTTBlnEmP

Gene Details
Chromosome: chr20
Transcript: TCONS_00028250
Biotype: transcript isomorph
Gene id: XLOC_013592
Gene Name: XLOC_013592
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-221-3p
Sequence: agcuacauugucugcuggguuuc
MirBase ID: MIMAT0000278
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
558-580
0.040
4
CTA-941F9.10
hsa-miR-221-3p
0.853
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000623075
Biotype: sense_overlapping
Gene id: ENSG00000280383
Gene Name: CTA-941F9.10
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-221-3p
Sequence: agcuacauugucugcuggguuuc
MirBase ID: MIMAT0000278
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
16102-16126
0.009
1
7mer
18729-18747
0.008
1
8mer
19375-19394
0.007
1
7mer
21808-21833
0.004
1
6mer
18030-18053
0.002
1
6mer
9456-9476
0.002
Not Conserved
6mer
11074-11093
0.001
1
6mer
19865-19891
0.001
1
6mer
21652-21677
0.001
0
6mer
11976-11998
0.001
1
6mer
21841-21862
0.001
1
6mer
10136-10155
0.001
1
6mer
3201-3223
0.001
0
6mer
3513-3532
0.001
0
6mer
2204-2218
0.001
0
AC124789.1
hsa-miR-221-3p
0.852
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000615582
Biotype: antisense
Gene id: ENSG00000276170
Gene Name: AC124789.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
Fibroblasts Lung Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-221-3p
Sequence: agcuacauugucugcuggguuuc
MirBase ID: MIMAT0000278
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
127-148
0.039
0
XLOC_005461
hsa-miR-221-3p
0.852
mTTBlnEmP

Gene Details
Chromosome: chr6
Transcript: TCONS_00011948
Biotype: transcript isomorph
Gene id: XLOC_005461
Gene Name: XLOC_005461
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Heart Normal/Primary
- Lung Normal/Primary
- Ovary Normal/Primary


miRNA Details
Name: hsa-miR-221-3p
Sequence: agcuacauugucugcuggguuuc
MirBase ID: MIMAT0000278
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
26-45
0.039
3
RP4-704D21.2
hsa-miR-221-3p
0.851
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000455718
Biotype: lincRNA
Gene id: ENSG00000234225
Gene Name: RP4-704D21.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Breast Normal/Primary
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-221-3p
Sequence: agcuacauugucugcuggguuuc
MirBase ID: MIMAT0000278
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
240-258
0.039
0
LOC145845
hsa-miR-221-3p
0.846
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: NR_024264.1
Biotype: lincRNA
Gene id: NR_024264.1 (gene)
Gene Name: LOC145845
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-221-3p
Sequence: agcuacauugucugcuggguuuc
MirBase ID: MIMAT0000278
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
492-515
0.034
4
6mer
725-750
0.003
1
6mer
1928-1950
0.002
0
RP11-240G22.4
hsa-miR-221-3p
0.846
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000614016
Biotype: lincRNA
Gene id: ENSG00000275467
Gene Name: RP11-240G22.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-221-3p
Sequence: agcuacauugucugcuggguuuc
MirBase ID: MIMAT0000278
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
333-356
0.039
1
RP11-649A18.4
hsa-miR-221-3p
0.843
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000579554
Biotype: sense_intronic
Gene id: ENSG00000263786
Gene Name: RP11-649A18.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
A549 Lung Cancer/Malignant
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-221-3p
Sequence: agcuacauugucugcuggguuuc
MirBase ID: MIMAT0000278
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
510-533
0.038
0
XLOC_004398
hsa-miR-221-3p
0.842
mTTBlnEmP

Gene Details
Chromosome: chr5
Transcript: TCONS_00009973
Biotype: transcript isomorph
Gene id: XLOC_004398
Gene Name: XLOC_004398
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
- Breast Normal/Primary
- Heart Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Liver Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-221-3p
Sequence: agcuacauugucugcuggguuuc
MirBase ID: MIMAT0000278
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2334-2358
0.025
0
7mer
1258-1282
0.006
1
6mer
114-131
0.004
2
7mer
1275-1298
0.003
2
CPEB2-AS1
hsa-miR-221-3p
0.842
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000501916
Biotype: lincRNA
Gene id: ENSG00000247624
Gene Name: CPEB2-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-221-3p
Sequence: agcuacauugucugcuggguuuc
MirBase ID: MIMAT0000278
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
556-572
0.034
1
6mer
1425-1448
0.004
0
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