LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-221-3p


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Gene
miRNA
Score
DIANA Links
RP11-234G16.5
hsa-miR-221-3p
0.905
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000614150
Biotype: antisense
Gene id: ENSG00000275005
Gene Name: RP11-234G16.5
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-221-3p
Sequence: agcuacauugucugcuggguuuc
MirBase ID: MIMAT0000278
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
318-341
0.048
11
LINC00908
hsa-miR-221-3p
0.903
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000584910
Biotype: lincRNA
Gene id: ENSG00000263812
Gene Name: LINC00908
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-221-3p
Sequence: agcuacauugucugcuggguuuc
MirBase ID: MIMAT0000278
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
339-359
0.047
0
RP11-747D18.1
hsa-miR-221-3p
0.900
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000472120
Biotype: lincRNA
Gene id: ENSG00000239205
Gene Name: RP11-747D18.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary


miRNA Details
Name: hsa-miR-221-3p
Sequence: agcuacauugucugcuggguuuc
MirBase ID: MIMAT0000278
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1656-1678
0.040
1
6mer
400-418
0.004
1
6mer
1412-1431
0.002
1
LINC00517
hsa-miR-221-3p
0.900
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000554257
Biotype: antisense
Gene id: ENSG00000259091
Gene Name: LINC00517
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Lymph Node Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary


miRNA Details
Name: hsa-miR-221-3p
Sequence: agcuacauugucugcuggguuuc
MirBase ID: MIMAT0000278
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1954-1972
0.020
1
8mer
380-402
0.016
2
7mer
629-650
0.009
4
6mer
2915-2938
0.002
Not Conserved
XLOC_012784
hsa-miR-221-3p
0.898
mTTBlnEmP

Gene Details
Chromosome: chr18
Transcript: TCONS_00026436
Biotype: transcript isomorph
Gene id: XLOC_012784
Gene Name: XLOC_012784
UCSC graphic: -
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HREpiC Kidney Normal/Primary
- Lymph Node Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-221-3p
Sequence: agcuacauugucugcuggguuuc
MirBase ID: MIMAT0000278
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2171-2192
0.030
0
7mer
1324-1345
0.016
0
XLOC_006731
hsa-miR-221-3p
0.898
mTTBlnEmP

Gene Details
Chromosome: chr8
Transcript: TCONS_00015245
Biotype: transcript isomorph
Gene id: XLOC_006731
Gene Name: XLOC_006731
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-221-3p
Sequence: agcuacauugucugcuggguuuc
MirBase ID: MIMAT0000278
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
270-294
0.046
1
RP11-407N8.6
hsa-miR-221-3p
0.892
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000614647
Biotype: lincRNA
Gene id: ENSG00000274156
Gene Name: RP11-407N8.6
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-221-3p
Sequence: agcuacauugucugcuggguuuc
MirBase ID: MIMAT0000278
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
318-343
0.045
1
AC007228.11
hsa-miR-221-3p
0.892
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000596587
Biotype: antisense
Gene id: ENSG00000269696
Gene Name: AC007228.11
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-221-3p
Sequence: agcuacauugucugcuggguuuc
MirBase ID: MIMAT0000278
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
263-288
0.045
0
RP11-299H22.6
hsa-miR-221-3p
0.890
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000568092
Biotype: lincRNA
Gene id: ENSG00000261296
Gene Name: RP11-299H22.6
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-221-3p
Sequence: agcuacauugucugcuggguuuc
MirBase ID: MIMAT0000278
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
545-557
0.038
1
6mer
2100-2118
0.005
1
6mer
2116-2142
0.002
1
RP11-321E2.4
hsa-miR-221-3p
0.886
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000503267
Biotype: lincRNA
Gene id: ENSG00000249662
Gene Name: RP11-321E2.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-221-3p
Sequence: agcuacauugucugcuggguuuc
MirBase ID: MIMAT0000278
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
456-477
0.038
2
6mer
122-144
0.006
1
RP13-612N21.1
hsa-miR-221-3p
0.883
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000504132
Biotype: lincRNA
Gene id: ENSG00000249613
Gene Name: RP13-612N21.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-221-3p
Sequence: agcuacauugucugcuggguuuc
MirBase ID: MIMAT0000278
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
78-99
0.044
1
MIR4534
hsa-miR-221-3p
0.883
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000623111
Biotype: sense_overlapping
Gene id: ENSG00000279010
Gene Name: MIR4534
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-221-3p
Sequence: agcuacauugucugcuggguuuc
MirBase ID: MIMAT0000278
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
53993-54012
0.009
1
6mer
54134-54153
0.002
1
6mer
54487-54506
0.002
0
6mer
8843-8869
0.002
2
6mer
53586-53608
0.002
1
6mer
1043-1064
0.002
1
6mer
6260-6284
0.002
0
6mer
26114-26133
0.001
2
6mer
53294-53313
0.001
1
7mer
27957-27976
0.001
1
6mer
1874-1893
0.001
2
6mer
25586-25610
0.001
5
6mer
9950-9969
0.001
1
6mer
10886-10906
0.001
0
6mer
2199-2221
0.001
0
6mer
46282-46299
0.001
1
6mer
7444-7463
0.001
1
6mer
4144-4162
0.001
0
6mer
1599-1618
0.001
0
6mer
16332-16352
0.001
1
6mer
29082-29101
0.001
1
6mer
9770-9792
0.001
1
6mer
11565-11584
0.001
1
6mer
43737-43751
0.001
0
6mer
28426-28445
0.001
Not Conserved
6mer
15048-15070
0.001
0
6mer
14747-14767
0.001
0
6mer
11985-12004
0.001
0
6mer
30859-30878
0.001
1
6mer
14452-14471
0.001
0
6mer
12159-12178
0.001
Not Conserved
RP11-360D2.1
hsa-miR-221-3p
0.882
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000417563
Biotype: antisense
Gene id: ENSG00000232113
Gene Name: RP11-360D2.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-221-3p
Sequence: agcuacauugucugcuggguuuc
MirBase ID: MIMAT0000278
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
287-306
0.044
4
RP5-1054A22.4
hsa-miR-221-3p
0.882
mTTBlnEmP

Gene Details
Chromosome: 20
Transcript: ENST00000620019
Biotype: sense_intronic
Gene id: ENSG00000277829
Gene Name: RP5-1054A22.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-221-3p
Sequence: agcuacauugucugcuggguuuc
MirBase ID: MIMAT0000278
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
239-259
0.041
2
6mer
389-412
0.003
Not Conserved
MIAT
hsa-miR-221-3p
0.878
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000616213
Biotype: lincRNA
Gene id: ENSG00000225783
Gene Name: MIAT
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
A549 Lung Cancer/Malignant
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-221-3p
Sequence: agcuacauugucugcuggguuuc
MirBase ID: MIMAT0000278
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
9879-9893
0.019
2
8mer
8760-8778
0.014
1
8mer
405-421
0.009
1
6mer
4333-4349
0.002
1
MIAT
hsa-miR-221-3p
0.878
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000620145
Biotype: lincRNA
Gene id: ENSG00000225783
Gene Name: MIAT
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
A549 Lung Cancer/Malignant
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-221-3p
Sequence: agcuacauugucugcuggguuuc
MirBase ID: MIMAT0000278
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
10005-10019
0.019
2
8mer
8886-8904
0.014
1
8mer
405-421
0.009
1
6mer
4459-4475
0.002
1
RP11-5C23.1
hsa-miR-221-3p
0.876
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000608064
Biotype: antisense
Gene id: ENSG00000272760
Gene Name: RP11-5C23.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-221-3p
Sequence: agcuacauugucugcuggguuuc
MirBase ID: MIMAT0000278
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
82-101
0.043
1
AC114776.3
hsa-miR-221-3p
0.875
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000414159
Biotype: lincRNA
Gene id: ENSG00000235881
Gene Name: AC114776.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-221-3p
Sequence: agcuacauugucugcuggguuuc
MirBase ID: MIMAT0000278
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2976-3002
0.039
1
6mer
3391-3415
0.004
0
MIAT
hsa-miR-221-3p
0.875
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000613780
Biotype: lincRNA
Gene id: ENSG00000225783
Gene Name: MIAT
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
A549 Lung Cancer/Malignant
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-221-3p
Sequence: agcuacauugucugcuggguuuc
MirBase ID: MIMAT0000278
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
10079-10093
0.019
2
8mer
8960-8978
0.014
1
8mer
479-495
0.008
1
6mer
4533-4549
0.002
1
RP4-564F22.7
hsa-miR-221-3p
0.875
mTTBlnEmP

Gene Details
Chromosome: 20
Transcript: ENST00000621084
Biotype: lincRNA
Gene id: ENSG00000275401
Gene Name: RP4-564F22.7
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-221-3p
Sequence: agcuacauugucugcuggguuuc
MirBase ID: MIMAT0000278
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
53-77
0.042
1
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