LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-221-3p


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Gene
miRNA
Score
DIANA Links
AC000120.7
hsa-miR-221-3p
0.946
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000414227
Biotype: sense_overlapping
Gene id: ENSG00000243107
Gene Name: AC000120.7
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant


miRNA Details
Name: hsa-miR-221-3p
Sequence: agcuacauugucugcuggguuuc
MirBase ID: MIMAT0000278
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
82-106
0.041
2
8mer
1294-1319
0.017
1
RP11-513G11.2
hsa-miR-221-3p
0.936
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000440556
Biotype: lincRNA
Gene id: ENSG00000228271
Gene Name: RP11-513G11.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Prostate Normal/Primary


miRNA Details
Name: hsa-miR-221-3p
Sequence: agcuacauugucugcuggguuuc
MirBase ID: MIMAT0000278
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1067-1088
0.047
5
6mer
1360-1384
0.004
7
6mer
1282-1299
0.003
4
MAMDC2-AS1
hsa-miR-221-3p
0.933
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000585478
Biotype: antisense
Gene id: ENSG00000204706
Gene Name: MAMDC2-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-221-3p
Sequence: agcuacauugucugcuggguuuc
MirBase ID: MIMAT0000278
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
624-644
0.040
0
7mer
1054-1076
0.009
0
6mer
1019-1044
0.004
2
CTA-125H2.2
hsa-miR-221-3p
0.933
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000600903
Biotype: antisense
Gene id: ENSG00000231933
Gene Name: CTA-125H2.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-221-3p
Sequence: agcuacauugucugcuggguuuc
MirBase ID: MIMAT0000278
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
85-98
0.054
6
XLOC_009124
hsa-miR-221-3p
0.932
mTTBlnEmP

Gene Details
Chromosome: chr11
Transcript: TCONS_00019298
Biotype: transcript isomorph
Gene id: XLOC_009124
Gene Name: XLOC_009124
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-221-3p
Sequence: agcuacauugucugcuggguuuc
MirBase ID: MIMAT0000278
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
18-44
0.054
1
RP11-372K14.2
hsa-miR-221-3p
0.932
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000603472
Biotype: antisense
Gene id: ENSG00000270681
Gene Name: RP11-372K14.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-221-3p
Sequence: agcuacauugucugcuggguuuc
MirBase ID: MIMAT0000278
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
997-1018
0.054
1
RP11-392P7.7
hsa-miR-221-3p
0.929
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000545158
Biotype: antisense
Gene id: ENSG00000256011
Gene Name: RP11-392P7.7
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-221-3p
Sequence: agcuacauugucugcuggguuuc
MirBase ID: MIMAT0000278
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
204-223
0.053
1
AC006548.28
hsa-miR-221-3p
0.929
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000623130
Biotype: sense_overlapping
Gene id: ENSG00000280156
Gene Name: AC006548.28
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-221-3p
Sequence: agcuacauugucugcuggguuuc
MirBase ID: MIMAT0000278
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2182-2202
0.014
2
7mer
37717-37722
0.006
1
7mer
32345-32359
0.006
1
7mer
31920-31932
0.004
0
6mer
210-217
0.004
0
7mer
70252-70279
0.004
0
6mer
1134-1157
0.003
1
7mer
13216-13234
0.002
0
6mer
78799-78821
0.002
0
6mer
15245-15259
0.001
0
6mer
25413-25434
0.001
0
6mer
29690-29710
0.001
0
6mer
37459-37481
0.001
0
6mer
18298-18319
0.001
1
6mer
66774-66799
0.001
Not Conserved
6mer
13825-13844
0.001
0
6mer
8998-9017
0.001
Not Conserved
CTD-2542C24.8
hsa-miR-221-3p
0.924
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000598137
Biotype: lincRNA
Gene id: ENSG00000268326
Gene Name: CTD-2542C24.8
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-221-3p
Sequence: agcuacauugucugcuggguuuc
MirBase ID: MIMAT0000278
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
96-120
0.052
0
XLOC_001025
hsa-miR-221-3p
0.923
mTTBlnEmP

Gene Details
Chromosome: chr1
Transcript: TCONS_00001679
Biotype: transcript isomorph
Gene id: XLOC_001025
Gene Name: XLOC_001025
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Kidney Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Liver Normal/Primary
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-221-3p
Sequence: agcuacauugucugcuggguuuc
MirBase ID: MIMAT0000278
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
159-179
0.051
2
RP11-1070A24.2
hsa-miR-221-3p
0.921
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000606037
Biotype: antisense
Gene id: ENSG00000272457
Gene Name: RP11-1070A24.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-221-3p
Sequence: agcuacauugucugcuggguuuc
MirBase ID: MIMAT0000278
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
459-481
0.051
1
XLOC_013931
hsa-miR-221-3p
0.920
mTTBlnEmP

Gene Details
Chromosome: chr21
Transcript: TCONS_00028843
Biotype: transcript isomorph
Gene id: XLOC_013931
Gene Name: XLOC_013931
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Brain Normal/Primary
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
- Kidney Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-221-3p
Sequence: agcuacauugucugcuggguuuc
MirBase ID: MIMAT0000278
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2376-2392
0.038
0
6mer
250-273
0.013
0
CTB-89H12.4
hsa-miR-221-3p
0.918
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000499521
Biotype: retained_intron
Gene id: ENSG00000230551
Gene Name: CTB-89H12.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-221-3p
Sequence: agcuacauugucugcuggguuuc
MirBase ID: MIMAT0000278
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
8004-8027
0.023
1
8mer
4508-4532
0.008
0
7mer
7572-7593
0.007
1
6mer
2349-2362
0.005
11
9mer
7253-7270
0.004
1
7mer
1377-1396
0.002
2
XLOC_002251
hsa-miR-221-3p
0.913
mTTBlnEmP

Gene Details
Chromosome: chr2
Transcript: TCONS_00004369
Biotype: transcript isomorph
Gene id: XLOC_002251
Gene Name: XLOC_002251
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-221-3p
Sequence: agcuacauugucugcuggguuuc
MirBase ID: MIMAT0000278
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
360-385
0.049
1
XLOC_013553
hsa-miR-221-3p
0.912
mTTBlnEmP

Gene Details
Chromosome: chr20
Transcript: TCONS_00028205
Biotype: transcript isomorph
Gene id: XLOC_013553
Gene Name: XLOC_013553
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-221-3p
Sequence: agcuacauugucugcuggguuuc
MirBase ID: MIMAT0000278
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
6522-6540
0.047
1
7mer
4642-4656
0.001
Not Conserved
LOC100132356
hsa-miR-221-3p
0.911
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: NR_034127.1
Biotype: antisense
Gene id: NR_034127.1 (gene)
Gene Name: LOC100132356
UCSC graphic: -
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-221-3p
Sequence: agcuacauugucugcuggguuuc
MirBase ID: MIMAT0000278
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer+wobble
18-36
0.042
1
6mer
982-1007
0.004
0
6mer
797-814
0.003
1
RP11-337C18.9
hsa-miR-221-3p
0.911
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000606152
Biotype: antisense
Gene id: ENSG00000271721
Gene Name: RP11-337C18.9
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-221-3p
Sequence: agcuacauugucugcuggguuuc
MirBase ID: MIMAT0000278
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
153-173
0.049
1
RP11-142O6.1
hsa-miR-221-3p
0.909
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000584382
Biotype: sense_intronic
Gene id: ENSG00000266371
Gene Name: RP11-142O6.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-221-3p
Sequence: agcuacauugucugcuggguuuc
MirBase ID: MIMAT0000278
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1692-1708
0.030
0
6mer
2638-2657
0.018
1
RP11-380B4.3
hsa-miR-221-3p
0.908
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000617901
Biotype: lincRNA
Gene id: ENSG00000277151
Gene Name: RP11-380B4.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-221-3p
Sequence: agcuacauugucugcuggguuuc
MirBase ID: MIMAT0000278
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
4925-4947
0.046
1
6mer
2474-2497
0.002
0
CTD-2626G11.2
hsa-miR-221-3p
0.907
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000593903
Biotype: lincRNA
Gene id: ENSG00000268416
Gene Name: CTD-2626G11.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-221-3p
Sequence: agcuacauugucugcuggguuuc
MirBase ID: MIMAT0000278
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
111-127
0.035
0
9mer
1616-1632
0.008
Not Conserved
7mer
2249-2268
0.003
Not Conserved
6mer
3582-3603
0.001
Not Conserved
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