LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-21-5p


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Gene
miRNA
Score
DIANA Links
CTD-2589M5.4
hsa-miR-21-5p
0.789
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000527239
Biotype: antisense
Gene id: ENSG00000255007
Gene Name: CTD-2589M5.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-21-5p
Sequence: uagcuuaucagacugauguuga
MirBase ID: MIMAT0000076
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
249-259
0.032
6
XLOC_011785
hsa-miR-21-5p
0.789
mTTBlnEmP

Gene Details
Chromosome: chr16
Transcript: TCONS_00024886
Biotype: transcript isomorph
Gene id: XLOC_011785
Gene Name: XLOC_011785
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-21-5p
Sequence: uagcuuaucagacugauguuga
MirBase ID: MIMAT0000076
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
683-699
0.020
1
7mer
642-668
0.012
1
LINC00593
hsa-miR-21-5p
0.789
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000560853
Biotype: lincRNA
Gene id: ENSG00000259703
Gene Name: LINC00593
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-21-5p
Sequence: uagcuuaucagacugauguuga
MirBase ID: MIMAT0000076
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
310-325
0.032
5
LINC00593
hsa-miR-21-5p
0.788
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000558385
Biotype: lincRNA
Gene id: ENSG00000259703
Gene Name: LINC00593
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-21-5p
Sequence: uagcuuaucagacugauguuga
MirBase ID: MIMAT0000076
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
305-320
0.032
5
XLOC_011297
hsa-miR-21-5p
0.788
mTTBlnEmP

Gene Details
Chromosome: chr15
Transcript: TCONS_00023189
Biotype: transcript isomorph
Gene id: XLOC_011297
Gene Name: XLOC_011297
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-21-5p
Sequence: uagcuuaucagacugauguuga
MirBase ID: MIMAT0000076
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
310-325
0.032
5
RP11-160H12.2
hsa-miR-21-5p
0.788
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000531424
Biotype: antisense
Gene id: ENSG00000255311
Gene Name: RP11-160H12.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
HeLa Cervix Cancer/Malignant


miRNA Details
Name: hsa-miR-21-5p
Sequence: uagcuuaucagacugauguuga
MirBase ID: MIMAT0000076
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
467-485
0.032
1
LINC00593
hsa-miR-21-5p
0.788
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: NR_026764.1
Biotype: lincRNA
Gene id: NR_026764.1 (gene)
Gene Name: LINC00593
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-21-5p
Sequence: uagcuuaucagacugauguuga
MirBase ID: MIMAT0000076
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
310-325
0.032
5
SATB1-AS1
hsa-miR-21-5p
0.787
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000438418
Biotype: retained_intron
Gene id: ENSG00000228956
Gene Name: SATB1-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
- Kidney Normal/Primary


miRNA Details
Name: hsa-miR-21-5p
Sequence: uagcuuaucagacugauguuga
MirBase ID: MIMAT0000076
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
607-624
0.032
1
AC012594.1
hsa-miR-21-5p
0.786
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000609459
Biotype: antisense
Gene id: ENSG00000231898
Gene Name: AC012594.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-21-5p
Sequence: uagcuuaucagacugauguuga
MirBase ID: MIMAT0000076
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
543-565
0.017
1
8mer+wobble
235-252
0.012
0
6mer
551-565
0.003
0
RP11-204N11.1
hsa-miR-21-5p
0.786
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000555187
Biotype: lincRNA
Gene id: ENSG00000258869
Gene Name: RP11-204N11.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-21-5p
Sequence: uagcuuaucagacugauguuga
MirBase ID: MIMAT0000076
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
553-576
0.032
1
ERVH48-1
hsa-miR-21-5p
0.786
mTTBlnEmP

Gene Details
Chromosome: 21
Transcript: ENST00000447535
Biotype: lincRNA
Gene id: ENSG00000233056
Gene Name: ERVH48-1
UCSC graphic:
Expression:
  Cell Line Tissue Category
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant


miRNA Details
Name: hsa-miR-21-5p
Sequence: uagcuuaucagacugauguuga
MirBase ID: MIMAT0000076
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1341-1366
0.019
0
6mer
2447-2474
0.013
0
LINC01140
hsa-miR-21-5p
0.786
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000484933
Biotype: lincRNA
Gene id: ENSG00000267272
Gene Name: LINC01140
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-21-5p
Sequence: uagcuuaucagacugauguuga
MirBase ID: MIMAT0000076
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
3114-3126
0.028
10
6mer
1135-1153
0.004
7
XLOC_003100
hsa-miR-21-5p
0.785
mTTBlnEmP

Gene Details
Chromosome: chr3
Transcript: TCONS_00006498
Biotype: transcript isomorph
Gene id: XLOC_003100
Gene Name: XLOC_003100
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
- Heart Normal/Primary
- Lymph Node Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-21-5p
Sequence: uagcuuaucagacugauguuga
MirBase ID: MIMAT0000076
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
111-132
0.032
0
LINC01473
hsa-miR-21-5p
0.785
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000456653
Biotype: lincRNA
Gene id: ENSG00000237877
Gene Name: LINC01473
UCSC graphic:
Expression:
  Cell Line Tissue Category
HepG2 Liver Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-21-5p
Sequence: uagcuuaucagacugauguuga
MirBase ID: MIMAT0000076
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
865-888
0.022
4
6mer
311-332
0.007
5
6mer
759-784
0.003
0
SATB1-AS1
hsa-miR-21-5p
0.784
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000610002
Biotype: retained_intron
Gene id: ENSG00000228956
Gene Name: SATB1-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
- Kidney Normal/Primary


miRNA Details
Name: hsa-miR-21-5p
Sequence: uagcuuaucagacugauguuga
MirBase ID: MIMAT0000076
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
607-624
0.032
1
XLOC_004366
hsa-miR-21-5p
0.782
mTTBlnEmP

Gene Details
Chromosome: chr5
Transcript: TCONS_00009941
Biotype: transcript isomorph
Gene id: XLOC_004366
Gene Name: XLOC_004366
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Liver Normal/Primary
Fibroblasts Lung Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-21-5p
Sequence: uagcuuaucagacugauguuga
MirBase ID: MIMAT0000076
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
10316-10336
0.019
1
8mer
11547-11567
0.010
0
6mer
12398-12423
0.003
1
RP11-473M10.3
hsa-miR-21-5p
0.781
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000611641
Biotype: lincRNA
Gene id: ENSG00000237378
Gene Name: RP11-473M10.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-21-5p
Sequence: uagcuuaucagacugauguuga
MirBase ID: MIMAT0000076
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1208-1229
0.017
0
7mer
814-833
0.011
0
6mer
773-790
0.004
0
XLOC_000340
hsa-miR-21-5p
0.781
mTTBlnEmP

Gene Details
Chromosome: chr1
Transcript: TCONS_00001092
Biotype: transcript isomorph
Gene id: XLOC_000340
Gene Name: XLOC_000340
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
Fibroblasts Foreskin Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Lymph Node Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-21-5p
Sequence: uagcuuaucagacugauguuga
MirBase ID: MIMAT0000076
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
52-67
0.029
1
6mer
1481-1498
0.003
0
RP11-555K2.4
hsa-miR-21-5p
0.781
mTTBlnEmP

Gene Details
Chromosome: 21
Transcript: ENST00000623559
Biotype: lincRNA
Gene id: ENSG00000279321
Gene Name: RP11-555K2.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-21-5p
Sequence: uagcuuaucagacugauguuga
MirBase ID: MIMAT0000076
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
324-345
0.031
1
LL22NC03-22D1.1
hsa-miR-21-5p
0.779
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000624601
Biotype: lincRNA
Gene id: ENSG00000279003
Gene Name: LL22NC03-22D1.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-21-5p
Sequence: uagcuuaucagacugauguuga
MirBase ID: MIMAT0000076
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
28050-28068
0.006
1
7mer
4295-4320
0.005
Not Conserved
6mer
13344-13367
0.003
6
6mer
8219-8244
0.002
4
6mer
20485-20508
0.002
1
6mer
10080-10098
0.002
2
6mer
20184-20202
0.002
1
6mer
27271-27287
0.002
0
6mer
2947-2954
0.001
0
6mer
25704-25726
0.001
0
6mer
26366-26385
0.001
1
6mer
16075-16088
0.001
1
6mer
18623-18640
0.001
0
6mer
27400-27414
0.001
1
6mer
10117-10135
0.000
0
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