LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-21-5p


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Gene
miRNA
Score
DIANA Links
ERVMER61-1
hsa-miR-21-5p
0.857
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000429725
Biotype: lincRNA
Gene id: ENSG00000230426
Gene Name: ERVMER61-1
UCSC graphic:
Expression:
  Cell Line Tissue Category
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-21-5p
Sequence: uagcuuaucagacugauguuga
MirBase ID: MIMAT0000076
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1897-1920
0.040
1
XLOC_003651
hsa-miR-21-5p
0.854
mTTBlnEmP

Gene Details
Chromosome: chr4
Transcript: TCONS_00007401
Biotype: transcript isomorph
Gene id: XLOC_003651
Gene Name: XLOC_003651
UCSC graphic: -
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
Fibroblasts Lung Normal/Primary


miRNA Details
Name: hsa-miR-21-5p
Sequence: uagcuuaucagacugauguuga
MirBase ID: MIMAT0000076
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1512-1527
0.032
1
6mer
1791-1807
0.007
0
LINC00938
hsa-miR-21-5p
0.854
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000609803
Biotype: lincRNA
Gene id: ENSG00000273015
Gene Name: LINC00938
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-21-5p
Sequence: uagcuuaucagacugauguuga
MirBase ID: MIMAT0000076
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1067-1083
0.013
1
7mer
8325-8342
0.007
3
8mer
6882-6891
0.005
3
6mer
477-504
0.004
3
6mer
488-505
0.004
2
7mer
2408-2434
0.003
1
6mer
7101-7117
0.003
4
6mer
7004-7021
0.001
1
DKFZP434L187
hsa-miR-21-5p
0.854
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000562624
Biotype: lincRNA
Gene id: ENSG00000225930
Gene Name: DKFZP434L187
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-21-5p
Sequence: uagcuuaucagacugauguuga
MirBase ID: MIMAT0000076
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
4235-4257
0.035
1
6mer
3531-3544
0.003
0
6mer
592-604
0.002
1
LINC01198
hsa-miR-21-5p
0.852
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000595532
Biotype: lincRNA
Gene id: ENSG00000231817
Gene Name: LINC01198
UCSC graphic:
Expression:
  Cell Line Tissue Category
HeLa Cervix Cancer/Malignant
HepG2 Liver Cancer/Malignant


miRNA Details
Name: hsa-miR-21-5p
Sequence: uagcuuaucagacugauguuga
MirBase ID: MIMAT0000076
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
208-229
0.021
0
7mer
601-620
0.013
0
6mer
644-661
0.005
0
RP11-587H10.1
hsa-miR-21-5p
0.851
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000521955
Biotype: lincRNA
Gene id: ENSG00000253371
Gene Name: RP11-587H10.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-21-5p
Sequence: uagcuuaucagacugauguuga
MirBase ID: MIMAT0000076
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
521-533
0.039
7
RP11-49G2.3
hsa-miR-21-5p
0.851
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000616957
Biotype: sense_intronic
Gene id: ENSG00000274624
Gene Name: RP11-49G2.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-21-5p
Sequence: uagcuuaucagacugauguuga
MirBase ID: MIMAT0000076
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
494-516
0.039
1
AP000997.2
hsa-miR-21-5p
0.847
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000564619
Biotype: lincRNA
Gene id: ENSG00000260254
Gene Name: AP000997.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-21-5p
Sequence: uagcuuaucagacugauguuga
MirBase ID: MIMAT0000076
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
278-303
0.030
2
6mer
37-49
0.005
2
6mer
360-379
0.004
2
RP11-179B15.5
hsa-miR-21-5p
0.846
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000440189
Biotype: lincRNA
Gene id: ENSG00000228527
Gene Name: RP11-179B15.5
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
- Ovary Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-21-5p
Sequence: uagcuuaucagacugauguuga
MirBase ID: MIMAT0000076
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
126-150
0.039
3
RP11-370A5.1
hsa-miR-21-5p
0.846
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000581177
Biotype: antisense
Gene id: ENSG00000266850
Gene Name: RP11-370A5.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-21-5p
Sequence: uagcuuaucagacugauguuga
MirBase ID: MIMAT0000076
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
100-120
0.039
8
LINC00029
hsa-miR-21-5p
0.845
mTTBlnEmP

Gene Details
Chromosome: 20
Transcript: ENST00000370341
Biotype: lincRNA
Gene id: ENSG00000125514
Gene Name: LINC00029
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-21-5p
Sequence: uagcuuaucagacugauguuga
MirBase ID: MIMAT0000076
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1321-1341
0.038
1
RP11-370A5.1
hsa-miR-21-5p
0.845
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000579356
Biotype: antisense
Gene id: ENSG00000266850
Gene Name: RP11-370A5.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-21-5p
Sequence: uagcuuaucagacugauguuga
MirBase ID: MIMAT0000076
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
112-132
0.038
8
XLOC_002759
hsa-miR-21-5p
0.843
mTTBlnEmP

Gene Details
Chromosome: chr3
Transcript: TCONS_00006930
Biotype: transcript isomorph
Gene id: XLOC_002759
Gene Name: XLOC_002759
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-21-5p
Sequence: uagcuuaucagacugauguuga
MirBase ID: MIMAT0000076
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
6600-6606
0.008
0
6mer
112-129
0.006
3
7mer
3463-3478
0.005
2
6mer
499-509
0.005
2
6mer
6393-6419
0.005
Not Conserved
7mer
5634-5656
0.003
0
6mer
5617-5642
0.003
1
6mer
1854-1870
0.002
0
6mer
3117-3135
0.001
0
RP11-20A20.2
hsa-miR-21-5p
0.843
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000602851
Biotype: lincRNA
Gene id: ENSG00000269957
Gene Name: RP11-20A20.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-21-5p
Sequence: uagcuuaucagacugauguuga
MirBase ID: MIMAT0000076
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
314-338
0.038
1
RP11-215G15.5
hsa-miR-21-5p
0.843
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000607560
Biotype: lincRNA
Gene id: ENSG00000272016
Gene Name: RP11-215G15.5
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-21-5p
Sequence: uagcuuaucagacugauguuga
MirBase ID: MIMAT0000076
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
3419-3443
0.023
1
7mer
3161-3186
0.014
2
6mer
2163-2183
0.002
0
LINC00663
hsa-miR-21-5p
0.840
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000586885
Biotype: lincRNA
Gene id: ENSG00000266904
Gene Name: LINC00663
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-21-5p
Sequence: uagcuuaucagacugauguuga
MirBase ID: MIMAT0000076
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2413-2435
0.029
1
6mer
7-22
0.009
0
RP11-15B24.5
hsa-miR-21-5p
0.839
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000585998
Biotype: lincRNA
Gene id: ENSG00000228430
Gene Name: RP11-15B24.5
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-21-5p
Sequence: uagcuuaucagacugauguuga
MirBase ID: MIMAT0000076
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
439-458
0.033
0
6mer
578-603
0.004
1
RP11-16E18.3
hsa-miR-21-5p
0.838
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000569835
Biotype: lincRNA
Gene id: ENSG00000261542
Gene Name: RP11-16E18.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-21-5p
Sequence: uagcuuaucagacugauguuga
MirBase ID: MIMAT0000076
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1880-1902
0.034
2
6mer
1242-1254
0.004
2
RP11-616K22.2
hsa-miR-21-5p
0.838
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000559034
Biotype: lincRNA
Gene id: ENSG00000259499
Gene Name: RP11-616K22.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-21-5p
Sequence: uagcuuaucagacugauguuga
MirBase ID: MIMAT0000076
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
231-256
0.033
1
6mer
19-45
0.005
0
RP11-583F2.2
hsa-miR-21-5p
0.837
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000583416
Biotype: lincRNA
Gene id: ENSG00000265912
Gene Name: RP11-583F2.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-21-5p
Sequence: uagcuuaucagacugauguuga
MirBase ID: MIMAT0000076
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
283-299
0.025
1
7mer
1592-1610
0.009
0
6mer
1105-1117
0.004
1
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