LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-21-5p


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Gene
miRNA
Score
DIANA Links
PWRN1
hsa-miR-21-5p
0.878
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000562244
Biotype: lincRNA
Gene id: ENSG00000259905
Gene Name: PWRN1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
- Kidney Normal/Primary
- Liver Normal/Primary
Fibroblasts Lung Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-21-5p
Sequence: uagcuuaucagacugauguuga
MirBase ID: MIMAT0000076
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
30-47
0.043
1
AC083900.1
hsa-miR-21-5p
0.875
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000421964
Biotype: sense_intronic
Gene id: ENSG00000225111
Gene Name: AC083900.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-21-5p
Sequence: uagcuuaucagacugauguuga
MirBase ID: MIMAT0000076
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
92-115
0.043
2
RP11-151A6.4
hsa-miR-21-5p
0.875
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000454752
Biotype: sense_intronic
Gene id: ENSG00000224356
Gene Name: RP11-151A6.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-21-5p
Sequence: uagcuuaucagacugauguuga
MirBase ID: MIMAT0000076
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2231-2248
0.041
3
6mer
1294-1311
0.002
1
XLOC_009474
hsa-miR-21-5p
0.874
mTTBlnEmP

Gene Details
Chromosome: chr11
Transcript: TCONS_00019666
Biotype: transcript isomorph
Gene id: XLOC_009474
Gene Name: XLOC_009474
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-21-5p
Sequence: uagcuuaucagacugauguuga
MirBase ID: MIMAT0000076
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
278-286
0.013
0
7mer
7034-7061
0.010
0
7mer
1310-1328
0.007
4
6mer
6563-6588
0.005
6
6mer
493-517
0.004
1
6mer
3435-3462
0.002
7
BRWD1-IT1
hsa-miR-21-5p
0.873
mTTBlnEmP

Gene Details
Chromosome: 21
Transcript: ENST00000435608
Biotype: sense_overlapping
Gene id: ENSG00000237373
Gene Name: BRWD1-IT1
UCSC graphic:
Expression:
  Cell Line Tissue Category
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-21-5p
Sequence: uagcuuaucagacugauguuga
MirBase ID: MIMAT0000076
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
148-164
0.042
1
XLOC_001108
hsa-miR-21-5p
0.872
mTTBlnEmP

Gene Details
Chromosome: chr1
Transcript: TCONS_00002525
Biotype: transcript isomorph
Gene id: XLOC_001108
Gene Name: XLOC_001108
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-21-5p
Sequence: uagcuuaucagacugauguuga
MirBase ID: MIMAT0000076
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
112-132
0.042
0
MIR663AHG
hsa-miR-21-5p
0.870
mTTBlnEmP

Gene Details
Chromosome: 20
Transcript: ENST00000593517
Biotype: retained_intron
Gene id: ENSG00000227195
Gene Name: MIR663AHG
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
- Lung Normal/Primary
- Testes Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-21-5p
Sequence: uagcuuaucagacugauguuga
MirBase ID: MIMAT0000076
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
338-364
0.042
0
TRAPPC12-AS1
hsa-miR-21-5p
0.870
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000453806
Biotype: antisense
Gene id: ENSG00000225234
Gene Name: TRAPPC12-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-21-5p
Sequence: uagcuuaucagacugauguuga
MirBase ID: MIMAT0000076
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
135-158
0.026
0
7mer
239-254
0.016
1
XLOC_007740
hsa-miR-21-5p
0.869
mTTBlnEmP

Gene Details
Chromosome: chr9
Transcript: TCONS_00016360
Biotype: transcript isomorph
Gene id: XLOC_007740
Gene Name: XLOC_007740
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-21-5p
Sequence: uagcuuaucagacugauguuga
MirBase ID: MIMAT0000076
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
431-451
0.035
1
6mer
355-367
0.007
2
RP11-305E6.4
hsa-miR-21-5p
0.869
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000561542
Biotype: sense_overlapping
Gene id: ENSG00000259994
Gene Name: RP11-305E6.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-21-5p
Sequence: uagcuuaucagacugauguuga
MirBase ID: MIMAT0000076
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
312-336
0.031
3
7mer
3126-3146
0.010
Not Conserved
XLOC_013861
hsa-miR-21-5p
0.867
mTTBlnEmP

Gene Details
Chromosome: chr21
Transcript: TCONS_00028968
Biotype: transcript isomorph
Gene id: XLOC_013861
Gene Name: XLOC_013861
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Breast Normal/Primary
- Lung Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-21-5p
Sequence: uagcuuaucagacugauguuga
MirBase ID: MIMAT0000076
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
447-468
0.041
0
RP11-370A5.1
hsa-miR-21-5p
0.865
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000581274
Biotype: antisense
Gene id: ENSG00000266850
Gene Name: RP11-370A5.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-21-5p
Sequence: uagcuuaucagacugauguuga
MirBase ID: MIMAT0000076
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
110-130
0.041
8
XLOC_013064
hsa-miR-21-5p
0.864
mTTBlnEmP

Gene Details
Chromosome: chr19
Transcript: TCONS_00027536
Biotype: transcript isomorph
Gene id: XLOC_013064
Gene Name: XLOC_013064
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
Fibroblasts Lung Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-21-5p
Sequence: uagcuuaucagacugauguuga
MirBase ID: MIMAT0000076
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
81-87
0.041
1
AC098617.1
hsa-miR-21-5p
0.863
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000609952
Biotype: antisense
Gene id: ENSG00000233766
Gene Name: AC098617.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-21-5p
Sequence: uagcuuaucagacugauguuga
MirBase ID: MIMAT0000076
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
173-189
0.041
1
RP11-708H21.4
hsa-miR-21-5p
0.862
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000575159
Biotype: lincRNA
Gene id: ENSG00000262973
Gene Name: RP11-708H21.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-21-5p
Sequence: uagcuuaucagacugauguuga
MirBase ID: MIMAT0000076
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
943-961
0.041
0
LINC00693
hsa-miR-21-5p
0.862
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000432518
Biotype: antisense
Gene id: ENSG00000228214
Gene Name: LINC00693
UCSC graphic:
Expression:
  Cell Line Tissue Category
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-21-5p
Sequence: uagcuuaucagacugauguuga
MirBase ID: MIMAT0000076
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1884-1909
0.028
2
7mer
148-163
0.013
2
MIR17HG
hsa-miR-21-5p
0.861
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000581816
Biotype: lincRNA
Gene id: ENSG00000215417
Gene Name: MIR17HG
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-21-5p
Sequence: uagcuuaucagacugauguuga
MirBase ID: MIMAT0000076
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1883-1900
0.040
0
ERVMER61-1
hsa-miR-21-5p
0.860
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000614505
Biotype: lincRNA
Gene id: ENSG00000230426
Gene Name: ERVMER61-1
UCSC graphic:
Expression:
  Cell Line Tissue Category
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-21-5p
Sequence: uagcuuaucagacugauguuga
MirBase ID: MIMAT0000076
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1749-1772
0.040
1
XLOC_010996
hsa-miR-21-5p
0.860
mTTBlnEmP

Gene Details
Chromosome: chr14
Transcript: TCONS_00023093
Biotype: transcript isomorph
Gene id: XLOC_010996
Gene Name: XLOC_010996
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Brain Normal/Primary
- Kidney Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-21-5p
Sequence: uagcuuaucagacugauguuga
MirBase ID: MIMAT0000076
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
5216-5236
0.021
1
7mer
129-149
0.017
1
6mer
5826-5851
0.002
1
LINC00841
hsa-miR-21-5p
0.859
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: NR_033846.1
Biotype: lincRNA
Gene id: NR_033846.1 (gene)
Gene Name: LINC00841
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-21-5p
Sequence: uagcuuaucagacugauguuga
MirBase ID: MIMAT0000076
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
628-644
0.027
1
7mer
151-171
0.013
1
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