LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-21-5p


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Gene
miRNA
Score
DIANA Links
XLOC_011428
hsa-miR-21-5p
0.902
mTTBlnEmP

Gene Details
Chromosome: chr15
Transcript: TCONS_00023628
Biotype: transcript isomorph
Gene id: XLOC_011428
Gene Name: XLOC_011428
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Prostate Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-21-5p
Sequence: uagcuuaucagacugauguuga
MirBase ID: MIMAT0000076
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
44-60
0.047
1
XLOC_013167
hsa-miR-21-5p
0.898
mTTBlnEmP

Gene Details
Chromosome: chr19
Transcript: TCONS_00026799
Biotype: transcript isomorph
Gene id: XLOC_013167
Gene Name: XLOC_013167
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
Fibroblasts Lung Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-21-5p
Sequence: uagcuuaucagacugauguuga
MirBase ID: MIMAT0000076
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2080-2102
0.023
1
9mer
2141-2163
0.020
1
6mer
1022-1037
0.003
1
XLOC_006107
hsa-miR-21-5p
0.897
mTTBlnEmP

Gene Details
Chromosome: chr7
Transcript: TCONS_00014135
Biotype: transcript isomorph
Gene id: XLOC_006107
Gene Name: XLOC_006107
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-21-5p
Sequence: uagcuuaucagacugauguuga
MirBase ID: MIMAT0000076
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
459-475
0.046
1
FAM66C
hsa-miR-21-5p
0.894
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000420514
Biotype: antisense
Gene id: ENSG00000226711
Gene Name: FAM66C
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-21-5p
Sequence: uagcuuaucagacugauguuga
MirBase ID: MIMAT0000076
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
469-487
0.032
0
6mer
56-73
0.014
0
AC009120.5
hsa-miR-21-5p
0.892
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000564455
Biotype: lincRNA
Gene id: ENSG00000260884
Gene Name: AC009120.5
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-21-5p
Sequence: uagcuuaucagacugauguuga
MirBase ID: MIMAT0000076
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
444-456
0.045
1
TTTY15
hsa-miR-21-5p
0.891
mTTBlnEmP

Gene Details
Chromosome: Y
Transcript: ENST00000417071
Biotype: lincRNA
Gene id: ENSG00000233864
Gene Name: TTTY15
UCSC graphic:
Expression:
  Cell Line Tissue Category
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-21-5p
Sequence: uagcuuaucagacugauguuga
MirBase ID: MIMAT0000076
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
800-805
0.018
0
6mer
511-523
0.014
0
6mer
115-137
0.014
0
AC009299.3
hsa-miR-21-5p
0.888
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000439050
Biotype: lincRNA
Gene id: ENSG00000227403
Gene Name: AC009299.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
- Kidney Normal/Primary
- Liver Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
- Lung Normal/Primary
- Lymph Node Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-21-5p
Sequence: uagcuuaucagacugauguuga
MirBase ID: MIMAT0000076
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
2131-2153
0.045
1
RP11-424G14.1
hsa-miR-21-5p
0.888
mTTBlnEmP

Gene Details
Chromosome: Y
Transcript: ENST00000566193
Biotype: lincRNA
Gene id: ENSG00000260197
Gene Name: RP11-424G14.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-21-5p
Sequence: uagcuuaucagacugauguuga
MirBase ID: MIMAT0000076
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
538-561
0.022
0
7mer
255-274
0.013
0
6mer
1777-1801
0.005
0
6mer
958-982
0.004
0
RP11-1109M24.16
hsa-miR-21-5p
0.887
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000578977
Biotype: lincRNA
Gene id: ENSG00000263609
Gene Name: RP11-1109M24.16
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-21-5p
Sequence: uagcuuaucagacugauguuga
MirBase ID: MIMAT0000076
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
764-785
0.013
0
6mer
8-31
0.010
0
6mer
179-193
0.007
0
6mer
352-376
0.006
0
6mer
937-958
0.005
0
6mer
714-730
0.004
0
XLOC_010213
hsa-miR-21-5p
0.886
mTTBlnEmP

Gene Details
Chromosome: chr12
Transcript: TCONS_00020943
Biotype: transcript isomorph
Gene id: XLOC_010213
Gene Name: XLOC_010213
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-21-5p
Sequence: uagcuuaucagacugauguuga
MirBase ID: MIMAT0000076
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
254-276
0.044
3
XLOC_003243
hsa-miR-21-5p
0.885
mTTBlnEmP

Gene Details
Chromosome: chr3
Transcript: TCONS_00006652
Biotype: transcript isomorph
Gene id: XLOC_003243
Gene Name: XLOC_003243
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-21-5p
Sequence: uagcuuaucagacugauguuga
MirBase ID: MIMAT0000076
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
336-353
0.044
1
RP11-672L10.2
hsa-miR-21-5p
0.885
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000581719
Biotype: antisense
Gene id: ENSG00000265179
Gene Name: RP11-672L10.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-21-5p
Sequence: uagcuuaucagacugauguuga
MirBase ID: MIMAT0000076
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
213-227
0.042
1
6mer
3048-3073
0.002
0
RP11-531A24.7
hsa-miR-21-5p
0.885
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000607665
Biotype: antisense
Gene id: ENSG00000272254
Gene Name: RP11-531A24.7
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-21-5p
Sequence: uagcuuaucagacugauguuga
MirBase ID: MIMAT0000076
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
301-320
0.044
1
RP11-508N12.2
hsa-miR-21-5p
0.884
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000439901
Biotype: antisense
Gene id: ENSG00000230782
Gene Name: RP11-508N12.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-21-5p
Sequence: uagcuuaucagacugauguuga
MirBase ID: MIMAT0000076
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
2127-2153
0.044
3
XLOC_001532
hsa-miR-21-5p
0.882
mTTBlnEmP

Gene Details
Chromosome: chr2
Transcript: TCONS_00003733
Biotype: transcript isomorph
Gene id: XLOC_001532
Gene Name: XLOC_001532
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
- Liver Normal/Primary
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-21-5p
Sequence: uagcuuaucagacugauguuga
MirBase ID: MIMAT0000076
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2410-2428
0.022
1
7mer
2587-2613
0.011
1
6mer
2494-2519
0.005
1
6mer
259-282
0.004
1
6mer
1356-1365
0.002
1
POT1-AS1
hsa-miR-21-5p
0.881
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000415715
Biotype: antisense
Gene id: ENSG00000224897
Gene Name: POT1-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-21-5p
Sequence: uagcuuaucagacugauguuga
MirBase ID: MIMAT0000076
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
85-104
0.043
1
PWRN1
hsa-miR-21-5p
0.880
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000568019
Biotype: lincRNA
Gene id: ENSG00000259905
Gene Name: PWRN1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
- Kidney Normal/Primary
- Liver Normal/Primary
Fibroblasts Lung Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-21-5p
Sequence: uagcuuaucagacugauguuga
MirBase ID: MIMAT0000076
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
119-134
0.024
1
7mer
227-243
0.019
1
MIR133A1HG
hsa-miR-21-5p
0.880
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000581072
Biotype: antisense
Gene id: ENSG00000265142
Gene Name: MIR133A1HG
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-21-5p
Sequence: uagcuuaucagacugauguuga
MirBase ID: MIMAT0000076
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
3052-3074
0.016
1
7mer
967-985
0.010
0
6mer
3973-3994
0.006
5
6mer
3668-3683
0.005
5
7mer
2502-2519
0.005
2
ERVH48-1
hsa-miR-21-5p
0.878
mTTBlnEmP

Gene Details
Chromosome: 21
Transcript: ENST00000617971
Biotype: lincRNA
Gene id: ENSG00000233056
Gene Name: ERVH48-1
UCSC graphic:
Expression:
  Cell Line Tissue Category
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant


miRNA Details
Name: hsa-miR-21-5p
Sequence: uagcuuaucagacugauguuga
MirBase ID: MIMAT0000076
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
894-919
0.028
0
6mer
2000-2027
0.015
0
XLOC_008942
hsa-miR-21-5p
0.878
mTTBlnEmP

Gene Details
Chromosome: chr10
Transcript: TCONS_00018599
Biotype: transcript isomorph
Gene id: XLOC_008942
Gene Name: XLOC_008942
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-21-5p
Sequence: uagcuuaucagacugauguuga
MirBase ID: MIMAT0000076
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
201-226
0.043
0
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