LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-21-5p


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Gene
miRNA
Score
DIANA Links
RP11-798M19.6
hsa-miR-21-5p
0.956
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000609153
Biotype: antisense
Gene id: ENSG00000272870
Gene Name: RP11-798M19.6
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
HepG2 Liver Cancer/Malignant
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
- Lymph Node Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-21-5p
Sequence: uagcuuaucagacugauguuga
MirBase ID: MIMAT0000076
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
71-89
0.061
1
DKFZP434K028
hsa-miR-21-5p
0.956
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000536405
Biotype: lincRNA
Gene id: ENSG00000124915
Gene Name: DKFZP434K028
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-21-5p
Sequence: uagcuuaucagacugauguuga
MirBase ID: MIMAT0000076
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
431-453
0.058
8
6mer
2347-2364
0.003
1
RP11-508N12.2
hsa-miR-21-5p
0.952
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000418656
Biotype: retained_intron
Gene id: ENSG00000230782
Gene Name: RP11-508N12.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-21-5p
Sequence: uagcuuaucagacugauguuga
MirBase ID: MIMAT0000076
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
470-496
0.060
3
RP11-119F7.5
hsa-miR-21-5p
0.951
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000562082
Biotype: sense_overlapping
Gene id: ENSG00000260400
Gene Name: RP11-119F7.5
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
HepG2 Liver Cancer/Malignant


miRNA Details
Name: hsa-miR-21-5p
Sequence: uagcuuaucagacugauguuga
MirBase ID: MIMAT0000076
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1958-1979
0.031
10
8mer
1578-1605
0.021
1
6mer
257-280
0.004
0
6mer
1366-1386
0.003
1
RP11-309H21.3
hsa-miR-21-5p
0.949
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000563320
Biotype: lincRNA
Gene id: ENSG00000261642
Gene Name: RP11-309H21.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-21-5p
Sequence: uagcuuaucagacugauguuga
MirBase ID: MIMAT0000076
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2062-2085
0.053
0
6mer
1889-1916
0.006
0
C1orf143
hsa-miR-21-5p
0.948
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000443836
Biotype: lincRNA
Gene id: ENSG00000228208
Gene Name: C1orf143
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-21-5p
Sequence: uagcuuaucagacugauguuga
MirBase ID: MIMAT0000076
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
424-437
0.025
5
8mer
318-337
0.014
1
6mer
746-759
0.013
8
6mer
300-321
0.007
3
AC009299.2
hsa-miR-21-5p
0.946
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000609940
Biotype: antisense
Gene id: ENSG00000235724
Gene Name: AC009299.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-21-5p
Sequence: uagcuuaucagacugauguuga
MirBase ID: MIMAT0000076
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
108-124
0.057
11
XLOC_009113
hsa-miR-21-5p
0.945
mTTBlnEmP

Gene Details
Chromosome: chr11
Transcript: TCONS_00019280
Biotype: transcript isomorph
Gene id: XLOC_009113
Gene Name: XLOC_009113
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-21-5p
Sequence: uagcuuaucagacugauguuga
MirBase ID: MIMAT0000076
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
170-195
0.052
2
6mer
244-260
0.005
1
TTTY15
hsa-miR-21-5p
0.943
mTTBlnEmP

Gene Details
Chromosome: Y
Transcript: NR_001545.2
Biotype: lincRNA
Gene id: NR_001545.2 (gene)
Gene Name: TTTY15
UCSC graphic: -
Expression:
  Cell Line Tissue Category
HUVEC Blood Vessel Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-21-5p
Sequence: uagcuuaucagacugauguuga
MirBase ID: MIMAT0000076
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2491-2507
0.017
0
6mer
285-307
0.013
0
6mer
479-500
0.010
0
6mer
902-914
0.009
0
6mer
1191-1196
0.008
0
RP13-192B19.2
hsa-miR-21-5p
0.940
mTTBlnEmP

Gene Details
Chromosome: X
Transcript: ENST00000569460
Biotype: lincRNA
Gene id: ENSG00000260585
Gene Name: RP13-192B19.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-21-5p
Sequence: uagcuuaucagacugauguuga
MirBase ID: MIMAT0000076
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
4831-4849
0.051
1
6mer
1419-1430
0.002
1
6mer
1652-1669
0.002
1
6mer
1461-1484
0.001
0
LINC00437
hsa-miR-21-5p
0.940
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000414161
Biotype: lincRNA
Gene id: ENSG00000236354
Gene Name: LINC00437
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-21-5p
Sequence: uagcuuaucagacugauguuga
MirBase ID: MIMAT0000076
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
158-178
0.056
2
RP11-706O15.1
hsa-miR-21-5p
0.940
mTTBlnEmP

Gene Details
Chromosome: X
Transcript: ENST00000471090
Biotype: lincRNA
Gene id: ENSG00000205664
Gene Name: RP11-706O15.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-21-5p
Sequence: uagcuuaucagacugauguuga
MirBase ID: MIMAT0000076
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
627-648
0.056
0
XLOC_008295
hsa-miR-21-5p
0.940
mTTBlnEmP

Gene Details
Chromosome: chrY
Transcript: TCONS_00017578
Biotype: transcript isomorph
Gene id: XLOC_008295
Gene Name: XLOC_008295
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
HUVEC Blood Vessel Normal/Primary
- Brain Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
- Liver Normal/Primary
A549 Lung Cancer/Malignant
Fibroblasts Lung Normal/Primary
- Lung Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-21-5p
Sequence: uagcuuaucagacugauguuga
MirBase ID: MIMAT0000076
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2524-2540
0.017
0
6mer
318-340
0.013
0
6mer
512-533
0.010
0
6mer
935-947
0.008
0
6mer
1224-1229
0.007
0
TTTY15
hsa-miR-21-5p
0.940
mTTBlnEmP

Gene Details
Chromosome: Y
Transcript: ENST00000440408
Biotype: lincRNA
Gene id: ENSG00000233864
Gene Name: TTTY15
UCSC graphic:
Expression:
  Cell Line Tissue Category
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-21-5p
Sequence: uagcuuaucagacugauguuga
MirBase ID: MIMAT0000076
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2524-2540
0.017
0
6mer
318-340
0.013
0
6mer
512-533
0.010
0
6mer
935-947
0.008
0
6mer
1224-1229
0.007
0
RP11-254I22.1
hsa-miR-21-5p
0.937
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000507997
Biotype: lincRNA
Gene id: ENSG00000250551
Gene Name: RP11-254I22.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-21-5p
Sequence: uagcuuaucagacugauguuga
MirBase ID: MIMAT0000076
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
273-291
0.034
5
7mer
528-547
0.020
1
RP11-449D8.1
hsa-miR-21-5p
0.936
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000577994
Biotype: lincRNA
Gene id: ENSG00000265485
Gene Name: RP11-449D8.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-21-5p
Sequence: uagcuuaucagacugauguuga
MirBase ID: MIMAT0000076
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
71-84
0.044
4
6mer
2011-2036
0.005
1
6mer
75-100
0.005
4
RP11-115J23.1
hsa-miR-21-5p
0.936
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000511073
Biotype: lincRNA
Gene id: ENSG00000249867
Gene Name: RP11-115J23.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-21-5p
Sequence: uagcuuaucagacugauguuga
MirBase ID: MIMAT0000076
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
656-662
0.032
1
7mer
579-600
0.022
1
ZNF582-AS1
hsa-miR-21-5p
0.935
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000587979
Biotype: lincRNA
Gene id: ENSG00000267454
Gene Name: ZNF582-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
IMR90 Lung Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-21-5p
Sequence: uagcuuaucagacugauguuga
MirBase ID: MIMAT0000076
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1221-1243
0.029
1
9mer
1282-1304
0.026
1
ZNF582-AS1
hsa-miR-21-5p
0.933
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000585659
Biotype: lincRNA
Gene id: ENSG00000267454
Gene Name: ZNF582-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
IMR90 Lung Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-21-5p
Sequence: uagcuuaucagacugauguuga
MirBase ID: MIMAT0000076
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1210-1232
0.029
1
9mer
1271-1293
0.025
1
C1orf143
hsa-miR-21-5p
0.929
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000491260
Biotype: lincRNA
Gene id: ENSG00000228208
Gene Name: C1orf143
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-21-5p
Sequence: uagcuuaucagacugauguuga
MirBase ID: MIMAT0000076
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
475-488
0.021
5
6mer
797-810
0.013
8
8mer
369-388
0.012
1
6mer
351-372
0.007
3
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