LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-20b-5p


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Gene
miRNA
Score
DIANA Links
LINC00293
hsa-miR-20b-5p
0.939
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: NR_027013.1
Biotype: lincRNA
Gene id: NR_027013.1 (gene)
Gene Name: LINC00293
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-20b-5p
Sequence: caaagugcucauagugcagguag
MirBase ID: MIMAT0001413
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1351-1376
0.038
1
7mer
536-554
0.018
0
RP11-363E7.4
hsa-miR-20b-5p
0.939
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000563205
Biotype: sense_overlapping
Gene id: ENSG00000260912
Gene Name: RP11-363E7.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-20b-5p
Sequence: caaagugcucauagugcagguag
MirBase ID: MIMAT0001413
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1722-1748
0.050
8
6mer
102-115
0.005
1
RP3-467K16.4
hsa-miR-20b-5p
0.938
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000427824
Biotype: lincRNA
Gene id: ENSG00000228140
Gene Name: RP3-467K16.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-20b-5p
Sequence: caaagugcucauagugcagguag
MirBase ID: MIMAT0001413
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
4638-4659
0.019
1
9mer
4220-4231
0.018
3
8mer
4017-4037
0.015
3
6mer
4523-4549
0.003
3
HAND2-AS1
hsa-miR-20b-5p
0.938
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000510339
Biotype: antisense
Gene id: ENSG00000237125
Gene Name: HAND2-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-20b-5p
Sequence: caaagugcucauagugcagguag
MirBase ID: MIMAT0001413
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2563-2583
0.021
8
8mer
913-939
0.018
7
6mer
641-660
0.008
6
6mer
336-356
0.003
1
6mer
720-739
0.003
4
6mer
903-918
0.002
Not Conserved
RP5-1024G6.8
hsa-miR-20b-5p
0.937
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000602943
Biotype: lincRNA
Gene id: ENSG00000270172
Gene Name: RP5-1024G6.8
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-20b-5p
Sequence: caaagugcucauagugcagguag
MirBase ID: MIMAT0001413
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1219-1232
0.031
6
7mer
542-561
0.012
4
9mer
1114-1130
0.011
7
RP11-555K2.4
hsa-miR-20b-5p
0.937
mTTBlnEmP

Gene Details
Chromosome: 21
Transcript: ENST00000624226
Biotype: lincRNA
Gene id: ENSG00000279321
Gene Name: RP11-555K2.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-20b-5p
Sequence: caaagugcucauagugcagguag
MirBase ID: MIMAT0001413
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
22-45
0.028
1
6mer
11-37
0.020
1
6mer
601-622
0.006
0
BCYRN1
hsa-miR-20b-5p
0.937
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000418539
Biotype: lincRNA
Gene id: ENSG00000236824
Gene Name: BCYRN1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HeLa Cervix Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-20b-5p
Sequence: caaagugcucauagugcagguag
MirBase ID: MIMAT0001413
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
304-322
0.019
1
8mer
928-947
0.008
1
8mer
12732-12751
0.007
1
6mer
322-343
0.005
0
8mer
6252-6271
0.004
1
9mer
11237-11261
0.003
1
9mer
2691-2715
0.003
0
6mer
5722-5739
0.002
1
6mer
8974-8987
0.002
1
7mer
7916-7940
0.002
0
RP11-887P2.5
hsa-miR-20b-5p
0.936
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000550287
Biotype: antisense
Gene id: ENSG00000258274
Gene Name: RP11-887P2.5
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-20b-5p
Sequence: caaagugcucauagugcagguag
MirBase ID: MIMAT0001413
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
51-72
0.033
2
7mer
1263-1289
0.008
2
7mer
1446-1470
0.005
1
7mer
579-603
0.005
1
6mer
1021-1041
0.003
0
AC073133.1
hsa-miR-20b-5p
0.936
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000436670
Biotype: lincRNA
Gene id: ENSG00000233878
Gene Name: AC073133.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-20b-5p
Sequence: caaagugcucauagugcagguag
MirBase ID: MIMAT0001413
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
145-161
0.055
6
RP11-168K11.3
hsa-miR-20b-5p
0.936
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000437712
Biotype: lincRNA
Gene id: ENSG00000233817
Gene Name: RP11-168K11.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Lung Normal/Primary
- Ovary Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-20b-5p
Sequence: caaagugcucauagugcagguag
MirBase ID: MIMAT0001413
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2593-2615
0.049
3
6mer
1834-1855
0.004
6
6mer
2161-2177
0.001
1
LL22NC03-86G7.1
hsa-miR-20b-5p
0.935
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000458178
Biotype: antisense
Gene id: ENSG00000224086
Gene Name: LL22NC03-86G7.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant


miRNA Details
Name: hsa-miR-20b-5p
Sequence: caaagugcucauagugcagguag
MirBase ID: MIMAT0001413
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
32504-32527
0.008
1
9mer
37483-37506
0.006
0
7mer
474-499
0.004
0
7mer
32893-32918
0.004
4
7mer
15812-15838
0.003
1
9mer
29873-29900
0.003
1
7mer
8573-8594
0.003
Not Conserved
9mer
24954-24971
0.003
1
6mer
36075-36100
0.003
1
7mer
4353-4379
0.002
0
7mer
10562-10583
0.002
1
7mer
34294-34319
0.002
1
6mer
29275-29301
0.002
1
6mer
36460-36481
0.002
1
6mer
7918-7935
0.001
1
7mer
3819-3845
0.001
Not Conserved
6mer
33324-33343
0.001
0
6mer
22119-22139
0.001
1
6mer
12162-12188
0.001
1
6mer
35149-35171
0.001
1
RP11-440L14.1
hsa-miR-20b-5p
0.935
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000503405
Biotype: antisense
Gene id: ENSG00000249592
Gene Name: RP11-440L14.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-20b-5p
Sequence: caaagugcucauagugcagguag
MirBase ID: MIMAT0001413
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
205-229
0.054
1
CTA-228A9.4
hsa-miR-20b-5p
0.935
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000624072
Biotype: antisense
Gene id: ENSG00000279080
Gene Name: CTA-228A9.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-20b-5p
Sequence: caaagugcucauagugcagguag
MirBase ID: MIMAT0001413
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
17029-17046
0.015
1
8mer
4461-4477
0.009
1
9mer
10030-10050
0.004
1
6mer
16348-16363
0.003
3
6mer
1202-1222
0.003
2
9mer
6107-6131
0.003
1
9mer
1607-1631
0.003
1
9mer
4080-4104
0.003
0
9mer
10711-10735
0.003
1
7mer
19465-19485
0.002
0
7mer
5573-5592
0.002
1
6mer
18131-18150
0.001
1
8mer
14148-14172
0.001
Not Conserved
6mer
6599-6614
0.001
1
6mer
18425-18446
0.001
1
6mer
11163-11180
0.001
0
XLOC_008328
hsa-miR-20b-5p
0.934
mTTBlnEmP

Gene Details
Chromosome: chrY
Transcript: TCONS_00017652
Biotype: transcript isomorph
Gene id: XLOC_008328
Gene Name: XLOC_008328
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Heart Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-20b-5p
Sequence: caaagugcucauagugcagguag
MirBase ID: MIMAT0001413
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
842-862
0.039
0
6mer
1238-1252
0.015
0
SGMS1-AS1
hsa-miR-20b-5p
0.933
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000443374
Biotype: antisense
Gene id: ENSG00000226200
Gene Name: SGMS1-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-20b-5p
Sequence: caaagugcucauagugcagguag
MirBase ID: MIMAT0001413
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
4108-4119
0.012
0
9mer
11905-11929
0.010
0
8mer
1758-1778
0.010
1
6mer
12298-12312
0.005
1
7mer
1119-1136
0.004
1
9mer
2316-2340
0.003
0
6mer
1108-1123
0.003
1
6mer
8143-8163
0.003
3
7mer
3171-3185
0.002
1
6mer
8985-9006
0.002
1
6mer
10024-10044
0.001
1
TTN-AS1
hsa-miR-20b-5p
0.933
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000589487
Biotype: antisense
Gene id: ENSG00000237298
Gene Name: TTN-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
HMEpC Mammary Gland Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-20b-5p
Sequence: caaagugcucauagugcagguag
MirBase ID: MIMAT0001413
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
838-860
0.026
8
7mer
494-500
0.023
6
6mer
774-797
0.005
2
NR2F2-AS1
hsa-miR-20b-5p
0.932
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000502125
Biotype: antisense
Gene id: ENSG00000247809
Gene Name: NR2F2-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-20b-5p
Sequence: caaagugcucauagugcagguag
MirBase ID: MIMAT0001413
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
31-44
0.038
9
8mer
532-549
0.013
1
6mer
585-608
0.002
2
RP11-1L9.1
hsa-miR-20b-5p
0.932
mTTBlnEmP

Gene Details
Chromosome: X
Transcript: ENST00000420403
Biotype: lincRNA
Gene id: ENSG00000226434
Gene Name: RP11-1L9.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant


miRNA Details
Name: hsa-miR-20b-5p
Sequence: caaagugcucauagugcagguag
MirBase ID: MIMAT0001413
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
291-310
0.053
1
AC096772.6
hsa-miR-20b-5p
0.932
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000343987
Biotype: lincRNA
Gene id: ENSG00000244567
Gene Name: AC096772.6
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-20b-5p
Sequence: caaagugcucauagugcagguag
MirBase ID: MIMAT0001413
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1057-1078
0.024
0
7mer
267-287
0.018
1
7mer
1012-1032
0.012
0
AGAP11
hsa-miR-20b-5p
0.931
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000444431
Biotype: processed_transcript
Gene id: ENSG00000151303
Gene Name: AGAP11
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-20b-5p
Sequence: caaagugcucauagugcagguag
MirBase ID: MIMAT0001413
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
155-181
0.043
1
6mer
2462-2488
0.004
1
6mer
986-1009
0.002
1
6mer
1149-1165
0.002
0
7mer
1962-1982
0.002
Not Conserved
6mer
1250-1266
0.001
0
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