LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-20b-5p


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Gene
miRNA
Score
DIANA Links
RFX3-AS1
hsa-miR-20b-5p
0.913
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000427722
Biotype: lincRNA
Gene id: ENSG00000232104
Gene Name: RFX3-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-20b-5p
Sequence: caaagugcucauagugcagguag
MirBase ID: MIMAT0001413
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
903-921
0.045
0
6mer
507-529
0.004
3
LOC100190986
hsa-miR-20b-5p
0.913
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: NR_024456.1
Biotype: sense
Gene id: NR_024456.1 (gene)
Gene Name: LOC100190986
UCSC graphic: -
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-20b-5p
Sequence: caaagugcucauagugcagguag
MirBase ID: MIMAT0001413
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
252-272
0.049
0
XLOC_008538
hsa-miR-20b-5p
0.912
mTTBlnEmP

Gene Details
Chromosome: chr10
Transcript: TCONS_00018256
Biotype: transcript isomorph
Gene id: XLOC_008538
Gene Name: XLOC_008538
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
K562 Blood Cancer/Malignant
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-20b-5p
Sequence: caaagugcucauagugcagguag
MirBase ID: MIMAT0001413
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
1947-1971
0.013
0
6mer
475-487
0.012
1
6mer
1809-1829
0.010
1
6mer
1754-1773
0.009
1
6mer
1661-1684
0.005
0
RP5-1014D13.2
hsa-miR-20b-5p
0.912
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000623726
Biotype: sense_overlapping
Gene id: ENSG00000279738
Gene Name: RP5-1014D13.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-20b-5p
Sequence: caaagugcucauagugcagguag
MirBase ID: MIMAT0001413
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
6187-6213
0.012
1
7mer
5027-5045
0.004
0
9mer
10159-10179
0.003
0
9mer
7505-7524
0.003
0
9mer
11200-11220
0.003
0
9mer
6594-6613
0.003
0
7mer
6883-6907
0.002
Not Conserved
9mer
5893-5917
0.002
0
7mer
4521-4548
0.002
1
9mer
7171-7192
0.002
0
9mer
3091-3111
0.002
0
7mer
9512-9532
0.002
0
6mer
8185-8206
0.002
1
6mer
12242-12259
0.001
2
7mer
9777-9801
0.001
0
6mer
16091-16118
0.001
0
7mer
6264-6284
0.001
0
XLOC_001343
hsa-miR-20b-5p
0.911
mTTBlnEmP

Gene Details
Chromosome: chr2
Transcript: TCONS_00002818
Biotype: transcript isomorph
Gene id: XLOC_001343
Gene Name: XLOC_001343
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Kidney Normal/Primary
- Liver Normal/Primary
Fibroblasts Lung Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-20b-5p
Sequence: caaagugcucauagugcagguag
MirBase ID: MIMAT0001413
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
12-29
0.013
1
9mer
629-653
0.012
1
6mer
2539-2553
0.010
2
7mer
35-54
0.009
0
6mer
1364-1373
0.003
1
6mer
1460-1487
0.001
0
RP11-356C4.3
hsa-miR-20b-5p
0.911
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000562203
Biotype: lincRNA
Gene id: ENSG00000260507
Gene Name: RP11-356C4.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-20b-5p
Sequence: caaagugcucauagugcagguag
MirBase ID: MIMAT0001413
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
332-356
0.049
0
PROX1-AS1
hsa-miR-20b-5p
0.910
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000433082
Biotype: antisense
Gene id: ENSG00000230461
Gene Name: PROX1-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
HepG2 Liver Cancer/Malignant


miRNA Details
Name: hsa-miR-20b-5p
Sequence: caaagugcucauagugcagguag
MirBase ID: MIMAT0001413
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
615-638
0.027
1
8mer
1948-1967
0.012
1
7mer
4303-4325
0.005
1
6mer
680-700
0.003
1
6mer
3677-3699
0.001
0
6mer
1918-1941
0.001
3
XLOC_007279
hsa-miR-20b-5p
0.910
mTTBlnEmP

Gene Details
Chromosome: chr9
Transcript: TCONS_00015917
Biotype: transcript isomorph
Gene id: XLOC_007279
Gene Name: XLOC_007279
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-20b-5p
Sequence: caaagugcucauagugcagguag
MirBase ID: MIMAT0001413
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
4359-4372
0.021
0
9mer
1537-1552
0.010
1
6mer
5172-5189
0.006
2
7mer
3645-3660
0.005
1
6mer
874-899
0.003
0
6mer
2673-2698
0.002
1
6mer
3952-3974
0.002
Not Conserved
ATP2B2-IT1
hsa-miR-20b-5p
0.910
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000440152
Biotype: sense_intronic
Gene id: ENSG00000236999
Gene Name: ATP2B2-IT1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-20b-5p
Sequence: caaagugcucauagugcagguag
MirBase ID: MIMAT0001413
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
415-439
0.048
3
RP11-206L10.9
hsa-miR-20b-5p
0.910
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000591440
Biotype: lincRNA
Gene id: ENSG00000237491
Gene Name: RP11-206L10.9
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-20b-5p
Sequence: caaagugcucauagugcagguag
MirBase ID: MIMAT0001413
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
717-740
0.043
1
6mer
146-166
0.006
1
AP000479.1
hsa-miR-20b-5p
0.908
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000532274
Biotype: lincRNA
Gene id: ENSG00000255433
Gene Name: AP000479.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-20b-5p
Sequence: caaagugcucauagugcagguag
MirBase ID: MIMAT0001413
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1414-1437
0.040
1
6mer
1799-1817
0.005
1
6mer
1728-1746
0.003
0
CTC-369A16.2
hsa-miR-20b-5p
0.907
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000510004
Biotype: lincRNA
Gene id: ENSG00000251421
Gene Name: CTC-369A16.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-20b-5p
Sequence: caaagugcucauagugcagguag
MirBase ID: MIMAT0001413
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
438-460
0.025
5
7mer
95-113
0.023
3
SPAG5-AS1
hsa-miR-20b-5p
0.907
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000556050
Biotype: antisense
Gene id: ENSG00000227543
Gene Name: SPAG5-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
HeLa Cervix Cancer/Malignant


miRNA Details
Name: hsa-miR-20b-5p
Sequence: caaagugcucauagugcagguag
MirBase ID: MIMAT0001413
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
735-750
0.034
0
9mer
781-805
0.014
0
RP11-424G14.1
hsa-miR-20b-5p
0.906
mTTBlnEmP

Gene Details
Chromosome: Y
Transcript: ENST00000566193
Biotype: lincRNA
Gene id: ENSG00000260197
Gene Name: RP11-424G14.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-20b-5p
Sequence: caaagugcucauagugcagguag
MirBase ID: MIMAT0001413
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
513-529
0.031
0
6mer
174-188
0.008
0
6mer
494-518
0.005
0
6mer
1088-1114
0.004
0
RP11-111F5.3
hsa-miR-20b-5p
0.905
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000448491
Biotype: lincRNA
Gene id: ENSG00000231212
Gene Name: RP11-111F5.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Breast Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-20b-5p
Sequence: caaagugcucauagugcagguag
MirBase ID: MIMAT0001413
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
451-467
0.028
1
6mer
459-485
0.020
1
MIR181A1HG
hsa-miR-20b-5p
0.904
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000432296
Biotype: lincRNA
Gene id: ENSG00000229989
Gene Name: MIR181A1HG
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Breast Normal/Primary
HMEpC Mammary Gland Normal/Primary
- Placenta Normal/Primary
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-20b-5p
Sequence: caaagugcucauagugcagguag
MirBase ID: MIMAT0001413
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
865-887
0.047
3
XLOC_004804
hsa-miR-20b-5p
0.904
mTTBlnEmP

Gene Details
Chromosome: chr5
Transcript: TCONS_00010322
Biotype: transcript isomorph
Gene id: XLOC_004804
Gene Name: XLOC_004804
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Kidney Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-20b-5p
Sequence: caaagugcucauagugcagguag
MirBase ID: MIMAT0001413
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
255-274
0.023
1
9mer
937-961
0.009
0
8mer
3020-3043
0.009
1
9mer
1802-1820
0.005
0
6mer
3135-3151
0.002
0
LINC00657
hsa-miR-20b-5p
0.904
mTTBlnEmP

Gene Details
Chromosome: 20
Transcript: ENST00000565493
Biotype: lincRNA
Gene id: ENSG00000260032
Gene Name: LINC00657
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-20b-5p
Sequence: caaagugcucauagugcagguag
MirBase ID: MIMAT0001413
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
80-103
0.011
6
7mer
500-524
0.008
Not Conserved
7mer
2874-2891
0.006
3
7mer
3515-3537
0.005
4
7mer
2576-2596
0.004
4
7mer
1949-1969
0.004
1
7mer
3185-3202
0.004
1
9mer
1639-1659
0.003
1
6mer
2709-2731
0.002
5
RP11-162A12.4
hsa-miR-20b-5p
0.902
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000622010
Biotype: lincRNA
Gene id: ENSG00000278107
Gene Name: RP11-162A12.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-20b-5p
Sequence: caaagugcucauagugcagguag
MirBase ID: MIMAT0001413
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
194-210
0.034
1
7mer
142-166
0.013
0
NCKAP5-IT1
hsa-miR-20b-5p
0.901
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000416437
Biotype: sense_intronic
Gene id: ENSG00000232474
Gene Name: NCKAP5-IT1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-20b-5p
Sequence: caaagugcucauagugcagguag
MirBase ID: MIMAT0001413
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
366-390
0.047
5
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