LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-20a-5p


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Gene
miRNA
Score
DIANA Links
AC006548.28
hsa-miR-20a-5p
0.994
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000623130
Biotype: sense_overlapping
Gene id: ENSG00000280156
Gene Name: AC006548.28
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-20a-5p
Sequence: uaaagugcuuauagugcagguag
MirBase ID: MIMAT0000075
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2339-2357
0.007
0
7mer
28256-28283
0.006
0
8mer
59328-59342
0.006
1
8mer
63298-63317
0.005
1
8mer
2177-2199
0.005
1
8mer+wobble
26663-26681
0.005
0
8mer
71556-71577
0.004
Not Conserved
7mer
36096-36116
0.004
3
7mer
72926-72953
0.004
0
7mer
45010-45025
0.003
1
8mer
81628-81648
0.003
1
7mer
67657-67684
0.003
Not Conserved
8mer
66882-66906
0.003
Not Conserved
7mer
51927-51948
0.002
Not Conserved
6mer
41050-41069
0.002
1
6mer
48070-48086
0.002
Not Conserved
6mer
16543-16560
0.002
1
6mer
56911-56927
0.002
1
7mer
38120-38140
0.002
1
6mer
58305-58332
0.002
1
6mer
59469-59493
0.002
1
7mer
41577-41595
0.002
0
6mer
55725-55744
0.002
0
6mer
78692-78710
0.002
Not Conserved
6mer
31062-31079
0.002
0
6mer
80180-80203
0.001
0
6mer
40396-40421
0.001
2
6mer
52732-52737
0.001
Not Conserved
6mer
24819-24824
0.001
0
6mer
72273-72293
0.001
Not Conserved
6mer
20630-20655
0.001
3
6mer
23289-23304
0.001
1
6mer
12105-12125
0.001
1
6mer
35981-36007
0.001
1
6mer
36841-36868
0.001
1
6mer
75137-75162
0.001
0
RP11-421L21.3
hsa-miR-20a-5p
0.994
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000416329
Biotype: antisense
Gene id: ENSG00000233184
Gene Name: RP11-421L21.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-20a-5p
Sequence: uaaagugcuuauagugcagguag
MirBase ID: MIMAT0000075
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
611-637
0.093
3
LINC00839
hsa-miR-20a-5p
0.994
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000429940
Biotype: lincRNA
Gene id: ENSG00000185904
Gene Name: LINC00839
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-20a-5p
Sequence: uaaagugcuuauagugcagguag
MirBase ID: MIMAT0000075
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1426-1447
0.083
1
6mer
1416-1440
0.010
1
LINC00839
hsa-miR-20a-5p
0.993
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000424751
Biotype: lincRNA
Gene id: ENSG00000185904
Gene Name: LINC00839
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-20a-5p
Sequence: uaaagugcuuauagugcagguag
MirBase ID: MIMAT0000075
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1425-1446
0.083
1
6mer
1415-1439
0.010
1
CTD-2313F11.1
hsa-miR-20a-5p
0.993
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000615566
Biotype: retained_intron
Gene id: ENSG00000240535
Gene Name: CTD-2313F11.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
HUVEC Blood Vessel Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-20a-5p
Sequence: uaaagugcuuauagugcagguag
MirBase ID: MIMAT0000075
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
704-721
0.063
2
8mer
521-539
0.029
1
RP11-168K11.3
hsa-miR-20a-5p
0.993
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000437712
Biotype: lincRNA
Gene id: ENSG00000233817
Gene Name: RP11-168K11.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Lung Normal/Primary
- Ovary Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-20a-5p
Sequence: uaaagugcuuauagugcagguag
MirBase ID: MIMAT0000075
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
2593-2616
0.088
3
6mer
1837-1855
0.004
6
LOC101929319
hsa-miR-20a-5p
0.993
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: NR_110248.1
Biotype: antisense
Gene id: NR_110248.1 (gene)
Gene Name: LOC101929319
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-20a-5p
Sequence: uaaagugcuuauagugcagguag
MirBase ID: MIMAT0000075
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
524-541
0.042
1
8mer
372-388
0.041
1
7mer
1438-1447
0.008
1
RP11-410C4.5
hsa-miR-20a-5p
0.993
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000563417
Biotype: lincRNA
Gene id: ENSG00000260505
Gene Name: RP11-410C4.5
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-20a-5p
Sequence: uaaagugcuuauagugcagguag
MirBase ID: MIMAT0000075
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
2390-2409
0.072
1
7mer
1927-1954
0.008
1
6mer
2675-2694
0.006
1
6mer
827-852
0.005
1
LOC102467081
hsa-miR-20a-5p
0.993
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: NR_104662.1
Biotype: sense
Gene id: NR_104662.1 (gene)
Gene Name: LOC102467081
UCSC graphic: -
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-20a-5p
Sequence: uaaagugcuuauagugcagguag
MirBase ID: MIMAT0000075
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
504-521
0.057
2
8mer
321-339
0.034
1
CTA-292E10.9
hsa-miR-20a-5p
0.992
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000623127
Biotype: antisense
Gene id: ENSG00000280111
Gene Name: CTA-292E10.9
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-20a-5p
Sequence: uaaagugcuuauagugcagguag
MirBase ID: MIMAT0000075
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
338-360
0.031
1
7mer
24406-24431
0.007
0
7mer
10077-10091
0.006
2
7mer
18583-18601
0.005
1
8mer
5246-5262
0.005
0
8mer
20048-20072
0.005
0
7mer
18652-18677
0.004
2
8mer
20709-20732
0.003
0
8mer
18912-18930
0.002
0
6mer
22093-22103
0.002
1
6mer
12355-12371
0.002
1
6mer
4848-4873
0.002
4
6mer
7237-7259
0.002
2
6mer
13579-13600
0.002
2
6mer
4274-4291
0.002
2
6mer
11425-11442
0.002
1
6mer
17559-17571
0.002
0
6mer
15303-15323
0.001
0
6mer
8934-8959
0.001
0
6mer
14844-14863
0.001
0
6mer
13155-13179
0.001
1
6mer
8987-9012
0.001
3
XLOC_007556
hsa-miR-20a-5p
0.992
mTTBlnEmP

Gene Details
Chromosome: chr9
Transcript: TCONS_00016692
Biotype: transcript isomorph
Gene id: XLOC_007556
Gene Name: XLOC_007556
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
- Brain Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
- Liver Normal/Primary
A549 Lung Cancer/Malignant
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-20a-5p
Sequence: uaaagugcuuauagugcagguag
MirBase ID: MIMAT0000075
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
4046-4060
0.075
1
6mer
4093-4117
0.006
3
6mer
3567-3584
0.004
1
8mer
1596-1616
0.003
0
6mer
2992-3012
0.002
1
AC007308.6
hsa-miR-20a-5p
0.992
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000430719
Biotype: antisense
Gene id: ENSG00000234252
Gene Name: AC007308.6
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-20a-5p
Sequence: uaaagugcuuauagugcagguag
MirBase ID: MIMAT0000075
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1539-1563
0.034
2
9mer
1830-1847
0.031
0
8mer
2107-2131
0.020
1
8mer
522-542
0.005
Not Conserved
XLOC_004823
hsa-miR-20a-5p
0.992
mTTBlnEmP

Gene Details
Chromosome: chr5
Transcript: TCONS_00010335
Biotype: transcript isomorph
Gene id: XLOC_004823
Gene Name: XLOC_004823
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-20a-5p
Sequence: uaaagugcuuauagugcagguag
MirBase ID: MIMAT0000075
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
763-780
0.061
2
8mer
580-598
0.028
1
RP3-323A16.1
hsa-miR-20a-5p
0.992
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000623959
Biotype: antisense
Gene id: ENSG00000279184
Gene Name: RP3-323A16.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-20a-5p
Sequence: uaaagugcuuauagugcagguag
MirBase ID: MIMAT0000075
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
14829-14846
0.006
1
9mer
44778-44798
0.005
0
7mer
9820-9839
0.005
1
7mer
25697-25716
0.005
1
8mer
38888-38907
0.005
1
8mer
10831-10855
0.004
1
7mer
20384-20399
0.004
3
8mer
28235-28259
0.004
1
8mer
19372-19388
0.004
Not Conserved
8mer
36600-36619
0.004
1
6mer
53936-53959
0.003
1
8mer
3006-3024
0.003
1
7mer
40257-40277
0.003
1
7mer
42744-42763
0.003
1
6mer
42058-42068
0.002
3
6mer
18913-18936
0.002
1
6mer
33470-33475
0.002
0
6mer
28981-28997
0.002
1
6mer
10104-10119
0.002
0
6mer
27503-27518
0.002
1
6mer
39886-39904
0.002
1
8mer
47950-47970
0.002
0
6mer
32855-32879
0.002
0
6mer
2034-2044
0.001
1
6mer
47826-47849
0.001
1
6mer
40191-40213
0.001
1
6mer
20161-20182
0.001
Not Conserved
6mer
11782-11801
0.001
1
6mer
1289-1310
0.001
Not Conserved
7mer
11840-11862
0.001
1
6mer
40438-40460
0.001
1
6mer
19350-19376
0.001
Not Conserved
7mer
17537-17561
0.001
Not Conserved
6mer
20315-20329
0.001
1
6mer
35236-35256
0.001
0
CTD-2524L6.3
hsa-miR-20a-5p
0.992
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000563041
Biotype: antisense
Gene id: ENSG00000260037
Gene Name: CTD-2524L6.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-20a-5p
Sequence: uaaagugcuuauagugcagguag
MirBase ID: MIMAT0000075
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
549-571
0.089
7
RP11-573D15.3
hsa-miR-20a-5p
0.991
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000434957
Biotype: antisense
Gene id: ENSG00000231724
Gene Name: RP11-573D15.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-20a-5p
Sequence: uaaagugcuuauagugcagguag
MirBase ID: MIMAT0000075
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
241-264
0.072
2
8mer
170-190
0.016
1
SIK3-IT1
hsa-miR-20a-5p
0.991
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000454832
Biotype: sense_intronic
Gene id: ENSG00000231865
Gene Name: SIK3-IT1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-20a-5p
Sequence: uaaagugcuuauagugcagguag
MirBase ID: MIMAT0000075
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
331-351
0.085
7
6mer
1926-1952
0.003
1
HAND2-AS1
hsa-miR-20a-5p
0.991
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000507571
Biotype: antisense
Gene id: ENSG00000237125
Gene Name: HAND2-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-20a-5p
Sequence: uaaagugcuuauagugcagguag
MirBase ID: MIMAT0000075
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
701-727
0.043
7
8mer
2351-2371
0.021
8
7mer
429-449
0.018
5
6mer
508-527
0.004
4
6mer
336-356
0.003
1
TTTY15
hsa-miR-20a-5p
0.990
mTTBlnEmP

Gene Details
Chromosome: Y
Transcript: NR_001545.2
Biotype: lincRNA
Gene id: NR_001545.2 (gene)
Gene Name: TTTY15
UCSC graphic: -
Expression:
  Cell Line Tissue Category
HUVEC Blood Vessel Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-20a-5p
Sequence: uaaagugcuuauagugcagguag
MirBase ID: MIMAT0000075
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2924-2944
0.023
0
7mer
1088-1109
0.021
0
7mer
3141-3158
0.021
0
8mer
3996-4019
0.014
0
6mer
3951-3963
0.007
0
RP11-887P2.5
hsa-miR-20a-5p
0.990
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000550287
Biotype: antisense
Gene id: ENSG00000258274
Gene Name: RP11-887P2.5
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-20a-5p
Sequence: uaaagugcuuauagugcagguag
MirBase ID: MIMAT0000075
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
50-72
0.076
2
6mer
1263-1289
0.004
2
6mer
1446-1470
0.003
1
6mer
579-603
0.003
1
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