LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-205-5p


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Gene
miRNA
Score
DIANA Links
LARGE-AS1
hsa-miR-205-5p
0.962
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000453336
Biotype: antisense
Gene id: ENSG00000224973
Gene Name: LARGE-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
1365-1379
0.033
1
8mer
2012-2031
0.029
Not Conserved
6mer
616-635
0.002
1
SRD5A3-AS1
hsa-miR-205-5p
0.962
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000601433
Biotype: antisense
Gene id: ENSG00000249700
Gene Name: SRD5A3-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
317-337
0.061
0
6mer
189-206
0.003
1
AP001372.2
hsa-miR-205-5p
0.962
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000612462
Biotype: lincRNA
Gene id: ENSG00000254837
Gene Name: AP001372.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
381-398
0.046
0
6mer
16-34
0.017
0
CTA-445C9.14
hsa-miR-205-5p
0.962
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000565764
Biotype: antisense
Gene id: ENSG00000261188
Gene Name: CTA-445C9.14
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
384-407
0.036
1
8mer
283-307
0.027
2
GS1-251I9.3
hsa-miR-205-5p
0.961
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000517920
Biotype: antisense
Gene id: ENSG00000253358
Gene Name: GS1-251I9.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
78-102
0.063
1
LOC388692
hsa-miR-205-5p
0.961
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: NR_027002.1
Biotype: lincRNA
Gene id: NR_027002.1 (gene)
Gene Name: LOC388692
UCSC graphic: -
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
555-578
0.038
1
7mer
2202-2217
0.012
2
7mer
2802-2828
0.005
1
7mer
4339-4344
0.004
0
6mer
11614-11633
0.002
1
6mer
1894-1908
0.001
1
6mer
8885-8905
0.001
0
AC010884.1
hsa-miR-205-5p
0.960
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000456519
Biotype: antisense
Gene id: ENSG00000224509
Gene Name: AC010884.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
58-76
0.049
2
6mer
324-346
0.010
11
6mer
347-372
0.004
5
RP11-4F22.2
hsa-miR-205-5p
0.960
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000584715
Biotype: antisense
Gene id: ENSG00000264630
Gene Name: RP11-4F22.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
9-33
0.062
1
XLOC_001108
hsa-miR-205-5p
0.959
mTTBlnEmP

Gene Details
Chromosome: chr1
Transcript: TCONS_00002525
Biotype: transcript isomorph
Gene id: XLOC_001108
Gene Name: XLOC_001108
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
74-97
0.062
1
RP11-431K24.1
hsa-miR-205-5p
0.959
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000445300
Biotype: lincRNA
Gene id: ENSG00000238290
Gene Name: RP11-431K24.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
HepG2 Liver Cancer/Malignant


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
371-394
0.022
0
7mer
81-105
0.016
1
8mer+wobble
568-590
0.015
1
7mer
300-317
0.009
0
LINC00589
hsa-miR-205-5p
0.959
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: NR_026765.1
Biotype: lincRNA
Gene id: NR_026765.1 (gene)
Gene Name: LINC00589
UCSC graphic: -
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1114-1134
0.050
3
6mer
1143-1160
0.005
2
7mer
1127-1150
0.005
0
6mer
700-720
0.002
0
RP11-26M5.3
hsa-miR-205-5p
0.959
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000520496
Biotype: antisense
Gene id: ENSG00000254314
Gene Name: RP11-26M5.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
419-438
0.059
2
6mer
540-559
0.003
0
LINC00589
hsa-miR-205-5p
0.959
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000506121
Biotype: lincRNA
Gene id: ENSG00000251191
Gene Name: LINC00589
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1119-1139
0.050
3
6mer
1148-1165
0.005
2
7mer
1132-1155
0.005
0
6mer
705-725
0.002
0
XLOC_007039
hsa-miR-205-5p
0.959
mTTBlnEmP

Gene Details
Chromosome: chr8
Transcript: TCONS_00014475
Biotype: transcript isomorph
Gene id: XLOC_007039
Gene Name: XLOC_007039
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Skeletal Muscle Normal/Primary


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1111-1131
0.050
3
6mer
1140-1157
0.005
2
7mer
1124-1147
0.005
0
6mer
697-717
0.002
0
XLOC_005131
hsa-miR-205-5p
0.958
mTTBlnEmP

Gene Details
Chromosome: chr6
Transcript: TCONS_00011649
Biotype: transcript isomorph
Gene id: XLOC_005131
Gene Name: XLOC_005131
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
- Liver Normal/Primary
Fibroblasts Lung Normal/Primary
- Lung Normal/Primary
A549 Lung Cancer/Malignant
- Lymph Node Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
1086-1103
0.060
1
6mer
804-820
0.002
0
RP1-45C12.1
hsa-miR-205-5p
0.958
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000455124
Biotype: antisense
Gene id: ENSG00000231424
Gene Name: RP1-45C12.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
173-200
0.062
1
NIFK-AS1
hsa-miR-205-5p
0.958
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: NR_037856.1
Biotype: lincRNA
Gene id: NR_037856.1 (gene)
Gene Name: NIFK-AS1
UCSC graphic: -
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
HeLa Cervix Cancer/Malignant
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
12-33
0.060
2
6mer
349-373
0.002
1
XLOC_003234
hsa-miR-205-5p
0.957
mTTBlnEmP

Gene Details
Chromosome: chr3
Transcript: TCONS_00006633
Biotype: transcript isomorph
Gene id: XLOC_003234
Gene Name: XLOC_003234
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
2068-2093
0.047
0
6mer
1984-2008
0.005
1
6mer
2053-2077
0.004
0
6mer
1676-1693
0.003
3
6mer
686-706
0.002
1
THAP9-AS1
hsa-miR-205-5p
0.957
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000504869
Biotype: antisense
Gene id: ENSG00000251022
Gene Name: THAP9-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
53-70
0.061
1
AC159540.1
hsa-miR-205-5p
0.957
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000596026
Biotype: lincRNA
Gene id: ENSG00000230606
Gene Name: AC159540.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
483-499
0.050
0
6mer
420-441
0.007
1
6mer
353-377
0.004
0
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