LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-205-5p


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Gene
miRNA
Score
DIANA Links
RP1-225E12.3
hsa-miR-205-5p
0.969
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000621913
Biotype: processed_transcript
Gene id: ENSG00000272446
Gene Name: RP1-225E12.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
379-400
0.049
8
7mer
295-313
0.018
11
RP11-60A8.1
hsa-miR-205-5p
0.968
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000503403
Biotype: lincRNA
Gene id: ENSG00000249743
Gene Name: RP11-60A8.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
- Kidney Normal/Primary
- Prostate Normal/Primary


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
264-288
0.066
5
XLOC_002698
hsa-miR-205-5p
0.968
mTTBlnEmP

Gene Details
Chromosome: chr3
Transcript: TCONS_00006087
Biotype: transcript isomorph
Gene id: XLOC_002698
Gene Name: XLOC_002698
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Colon Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
682-699
0.042
7
7mer
660-678
0.024
4
LCMT1-AS2
hsa-miR-205-5p
0.967
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000562280
Biotype: antisense
Gene id: ENSG00000260034
Gene Name: LCMT1-AS2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
925-941
0.027
1
7mer
1471-1487
0.019
1
6mer
215-237
0.011
1
6mer
724-743
0.009
1
RP4-694A7.2
hsa-miR-205-5p
0.967
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000425820
Biotype: antisense
Gene id: ENSG00000233589
Gene Name: RP4-694A7.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
195-216
0.042
8
7mer
214-239
0.024
2
XLOC_008552
hsa-miR-205-5p
0.966
mTTBlnEmP

Gene Details
Chromosome: chr10
Transcript: TCONS_00018273
Biotype: transcript isomorph
Gene id: XLOC_008552
Gene Name: XLOC_008552
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
8-31
0.062
1
6mer
186-212
0.004
1
LINC00347
hsa-miR-205-5p
0.966
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000594461
Biotype: lincRNA
Gene id: ENSG00000236678
Gene Name: LINC00347
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Lymph Node Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
429-450
0.055
8
6mer
2258-2271
0.007
5
6mer
236-256
0.003
0
SLC14A2-AS1
hsa-miR-205-5p
0.966
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000585759
Biotype: antisense
Gene id: ENSG00000267097
Gene Name: SLC14A2-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
57-75
0.065
5
THAP9-AS1
hsa-miR-205-5p
0.966
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000503704
Biotype: antisense
Gene id: ENSG00000251022
Gene Name: THAP9-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
262-279
0.059
1
6mer
82-105
0.003
Not Conserved
6mer
49-74
0.003
0
RP11-60A8.1
hsa-miR-205-5p
0.966
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000513280
Biotype: lincRNA
Gene id: ENSG00000249743
Gene Name: RP11-60A8.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
- Kidney Normal/Primary
- Prostate Normal/Primary


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
269-293
0.065
5
CTC-498J12.1
hsa-miR-205-5p
0.965
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000479830
Biotype: lincRNA
Gene id: ENSG00000250237
Gene Name: CTC-498J12.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Kidney Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
202-223
0.065
0
LINC00347
hsa-miR-205-5p
0.965
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000596240
Biotype: lincRNA
Gene id: ENSG00000236678
Gene Name: LINC00347
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Lymph Node Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
142-163
0.065
8
SRD5A3-AS1
hsa-miR-205-5p
0.965
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000619203
Biotype: retained_intron
Gene id: ENSG00000249700
Gene Name: SRD5A3-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
846-866
0.060
0
6mer
439-456
0.005
1
CTD-2147F2.2
hsa-miR-205-5p
0.964
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000558621
Biotype: lincRNA
Gene id: ENSG00000259664
Gene Name: CTD-2147F2.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1481-1503
0.058
8
6mer
368-394
0.004
2
6mer
899-911
0.003
2
THAP9-AS1
hsa-miR-205-5p
0.964
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000507660
Biotype: antisense
Gene id: ENSG00000251022
Gene Name: THAP9-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
173-190
0.065
1
XLOC_010599
hsa-miR-205-5p
0.964
mTTBlnEmP

Gene Details
Chromosome: chr13
Transcript: TCONS_00021999
Biotype: transcript isomorph
Gene id: XLOC_010599
Gene Name: XLOC_010599
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
570-597
0.060
1
6mer
179-205
0.004
1
LINC00222
hsa-miR-205-5p
0.963
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000368974
Biotype: lincRNA
Gene id: ENSG00000203801
Gene Name: LINC00222
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
878-899
0.056
1
6mer
947-966
0.005
2
6mer
1030-1056
0.002
1
LINC00587
hsa-miR-205-5p
0.963
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000374801
Biotype: lincRNA
Gene id: ENSG00000204250
Gene Name: LINC00587
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
492-512
0.064
0
LINC00587
hsa-miR-205-5p
0.963
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: NR_103830.1
Biotype: lincRNA
Gene id: NR_103830.1 (gene)
Gene Name: LINC00587
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
477-497
0.064
0
AC078941.1
hsa-miR-205-5p
0.963
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000414404
Biotype: lincRNA
Gene id: ENSG00000236780
Gene Name: AC078941.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Lung Normal/Primary
- Ovary Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
314-333
0.064
1
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