LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-205-5p


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Gene
miRNA
Score
DIANA Links
LINC00466
hsa-miR-205-5p
0.974
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000436475
Biotype: lincRNA
Gene id: ENSG00000224209
Gene Name: LINC00466
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
113-128
0.068
11
6mer
977-997
0.002
0
AC003986.5
hsa-miR-205-5p
0.974
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000452700
Biotype: antisense
Gene id: ENSG00000229533
Gene Name: AC003986.5
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
167-184
0.070
12
LINC01183
hsa-miR-205-5p
0.973
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000514853
Biotype: lincRNA
Gene id: ENSG00000230561
Gene Name: LINC01183
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
559-574
0.037
1
7mer
276-295
0.025
5
6mer
1000-1013
0.007
3
CTD-2006C1.2
hsa-miR-205-5p
0.973
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000592187
Biotype: retained_intron
Gene id: ENSG00000219665
Gene Name: CTD-2006C1.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
714-730
0.037
1
7mer
3929-3950
0.011
0
6mer
516-541
0.010
1
6mer
3825-3851
0.008
0
6mer
2193-2214
0.003
0
ERVK13-1
hsa-miR-205-5p
0.973
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: NR_040023.1
Biotype: lincRNA
Gene id: NR_040023.1 (gene)
Gene Name: ERVK13-1
UCSC graphic: -
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
8058-8079
0.048
1
6mer
190-204
0.007
3
7mer
350-374
0.004
1
6mer
8270-8297
0.003
Not Conserved
6mer
1824-1849
0.002
3
6mer
3108-3128
0.002
Not Conserved
6mer
6982-7006
0.001
1
6mer
6419-6431
0.001
0
GS1-519E5.1
hsa-miR-205-5p
0.973
mTTBlnEmP

Gene Details
Chromosome: X
Transcript: ENST00000432442
Biotype: lincRNA
Gene id: ENSG00000228543
Gene Name: GS1-519E5.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
497-517
0.015
0
7mer
793-818
0.011
0
7mer
43-62
0.008
1
6mer
250-273
0.004
0
6mer
333-352
0.004
1
6mer
60-79
0.004
1
6mer
93-116
0.003
1
6mer
131-158
0.003
0
6mer
693-717
0.002
1
6mer
159-186
0.002
Not Conserved
6mer
366-383
0.002
1
6mer
148-165
0.002
Not Conserved
6mer
452-471
0.002
Not Conserved
6mer
525-545
0.002
1
6mer
117-137
0.002
Not Conserved
6mer
346-373
0.002
0
6mer
110-130
0.002
Not Conserved
TTTY15
hsa-miR-205-5p
0.972
mTTBlnEmP

Gene Details
Chromosome: Y
Transcript: NR_001545.2
Biotype: lincRNA
Gene id: NR_001545.2 (gene)
Gene Name: TTTY15
UCSC graphic: -
Expression:
  Cell Line Tissue Category
HUVEC Blood Vessel Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
4340-4367
0.069
0
XLOC_008295
hsa-miR-205-5p
0.972
mTTBlnEmP

Gene Details
Chromosome: chrY
Transcript: TCONS_00017578
Biotype: transcript isomorph
Gene id: XLOC_008295
Gene Name: XLOC_008295
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
HUVEC Blood Vessel Normal/Primary
- Brain Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
- Liver Normal/Primary
A549 Lung Cancer/Malignant
Fibroblasts Lung Normal/Primary
- Lung Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
4373-4400
0.069
0
RP5-1051H14.2
hsa-miR-205-5p
0.972
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000419836
Biotype: lincRNA
Gene id: ENSG00000228636
Gene Name: RP5-1051H14.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
124-146
0.052
0
7mer
100-116
0.017
0
CTD-2196E14.3
hsa-miR-205-5p
0.972
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000561764
Biotype: antisense
Gene id: ENSG00000261723
Gene Name: CTD-2196E14.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
480-497
0.043
1
8mer
369-393
0.022
2
6mer
360-379
0.004
1
TTTY15
hsa-miR-205-5p
0.971
mTTBlnEmP

Gene Details
Chromosome: Y
Transcript: ENST00000440408
Biotype: lincRNA
Gene id: ENSG00000233864
Gene Name: TTTY15
UCSC graphic:
Expression:
  Cell Line Tissue Category
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
4373-4400
0.068
0
AC096649.3
hsa-miR-205-5p
0.971
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000438963
Biotype: lincRNA
Gene id: ENSG00000229066
Gene Name: AC096649.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
421-438
0.067
9
6mer
111-131
0.001
0
C3orf67-AS1
hsa-miR-205-5p
0.971
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000482372
Biotype: antisense
Gene id: ENSG00000242428
Gene Name: C3orf67-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
33-59
0.038
1
8mer
1838-1865
0.021
2
6mer
240-267
0.005
5
6mer
1600-1627
0.004
4
RP11-57H14.2
hsa-miR-205-5p
0.971
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000369391
Biotype: antisense
Gene id: ENSG00000233547
Gene Name: RP11-57H14.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
68-93
0.037
2
7mer
170-195
0.031
8
LINC00589
hsa-miR-205-5p
0.970
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000518623
Biotype: lincRNA
Gene id: ENSG00000251191
Gene Name: LINC00589
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
695-715
0.045
3
7mer
218-237
0.013
1
7mer
708-731
0.005
0
6mer
724-741
0.005
2
LINC00184
hsa-miR-205-5p
0.970
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000429269
Biotype: lincRNA
Gene id: ENSG00000224939
Gene Name: LINC00184
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1253-1269
0.062
6
6mer
319-343
0.003
0
6mer
1323-1335
0.002
1
6mer
1468-1485
0.002
1
RP11-355N15.1
hsa-miR-205-5p
0.970
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000561083
Biotype: antisense
Gene id: ENSG00000259293
Gene Name: RP11-355N15.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
162-183
0.057
0
7mer
2101-2128
0.010
1
XLOC_000623
hsa-miR-205-5p
0.970
mTTBlnEmP

Gene Details
Chromosome: chr1
Transcript: TCONS_00000010
Biotype: transcript isomorph
Gene id: XLOC_000623
Gene Name: XLOC_000623
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Skeletal Muscle Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1253-1269
0.061
6
6mer
319-343
0.003
0
6mer
1323-1335
0.002
1
6mer
1468-1485
0.002
1
THAP9-AS1
hsa-miR-205-5p
0.969
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000508772
Biotype: antisense
Gene id: ENSG00000251022
Gene Name: THAP9-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
191-208
0.061
1
6mer
84-104
0.006
2
LOC646719
hsa-miR-205-5p
0.969
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: NR_046262.1
Biotype: lincRNA
Gene id: NR_046262.1 (gene)
Gene Name: LOC646719
UCSC graphic: -
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
704-718
0.045
3
7mer
257-281
0.019
1
7mer
1666-1691
0.004
Not Conserved
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