LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-205-5p


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Gene
miRNA
Score
DIANA Links
RP11-2N5.1
hsa-miR-205-5p
0.980
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000503320
Biotype: lincRNA
Gene id: ENSG00000249128
Gene Name: RP11-2N5.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
499-521
0.068
1
6mer
11-34
0.006
1
ERVK3-1
hsa-miR-205-5p
0.980
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000590505
Biotype: retained_intron
Gene id: ENSG00000142396
Gene Name: ERVK3-1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
3802-3824
0.021
0
7mer
135-162
0.015
0
8mer+wobble
3530-3548
0.014
1
6mer
3520-3541
0.009
1
6mer
3633-3656
0.009
1
7mer
1626-1650
0.004
0
6mer
2513-2534
0.002
0
RP11-393J16.4
hsa-miR-205-5p
0.980
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000412789
Biotype: lincRNA
Gene id: ENSG00000226447
Gene Name: RP11-393J16.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
101-124
0.074
1
XLOC_010884
hsa-miR-205-5p
0.980
mTTBlnEmP

Gene Details
Chromosome: chr14
Transcript: TCONS_00022565
Biotype: transcript isomorph
Gene id: XLOC_010884
Gene Name: XLOC_010884
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Skeletal Muscle Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
127-145
0.069
1
6mer
94-119
0.005
0
XXyac-YX155B6.5
hsa-miR-205-5p
0.980
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000594189
Biotype: lincRNA
Gene id: ENSG00000232265
Gene Name: XXyac-YX155B6.5
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
665-689
0.074
0
RP5-855D21.3
hsa-miR-205-5p
0.980
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000609090
Biotype: sense_intronic
Gene id: ENSG00000272812
Gene Name: RP5-855D21.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
HeLa Cervix Cancer/Malignant
HepG2 Liver Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
38-56
0.056
1
7mer
484-501
0.018
0
RP11-357N13.2
hsa-miR-205-5p
0.979
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000565641
Biotype: antisense
Gene id: ENSG00000260194
Gene Name: RP11-357N13.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
457-483
0.071
4
6mer
396-417
0.003
0
RP11-588G21.2
hsa-miR-205-5p
0.979
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000501387
Biotype: antisense
Gene id: ENSG00000247131
Gene Name: RP11-588G21.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
686-709
0.055
4
7mer
179-192
0.012
1
7mer
940-958
0.004
0
6mer
986-1001
0.002
1
XLOC_012554
hsa-miR-205-5p
0.979
mTTBlnEmP

Gene Details
Chromosome: chr17
Transcript: TCONS_00025738
Biotype: transcript isomorph
Gene id: XLOC_012554
Gene Name: XLOC_012554
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
221-244
0.073
1
XLOC_002262
hsa-miR-205-5p
0.978
mTTBlnEmP

Gene Details
Chromosome: chr2
Transcript: TCONS_00004377
Biotype: transcript isomorph
Gene id: XLOC_002262
Gene Name: XLOC_002262
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
341-355
0.060
1
7mer
358-374
0.013
1
LINC00347
hsa-miR-205-5p
0.977
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000595711
Biotype: lincRNA
Gene id: ENSG00000236678
Gene Name: LINC00347
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Lymph Node Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
519-540
0.069
8
6mer
289-309
0.003
0
RP11-152C17.1
hsa-miR-205-5p
0.976
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000494900
Biotype: lincRNA
Gene id: ENSG00000241383
Gene Name: RP11-152C17.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
50-73
0.072
1
CTC-339D2.1
hsa-miR-205-5p
0.976
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000507428
Biotype: lincRNA
Gene id: ENSG00000248107
Gene Name: CTC-339D2.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
533-554
0.071
1
RP11-67A1.2
hsa-miR-205-5p
0.976
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000548144
Biotype: processed_transcript
Gene id: ENSG00000261864
Gene Name: RP11-67A1.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
398-424
0.071
9
CTA-445C9.14
hsa-miR-205-5p
0.976
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000566814
Biotype: antisense
Gene id: ENSG00000261188
Gene Name: CTA-445C9.14
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
402-425
0.040
1
8mer
301-325
0.031
2
CTA-796E4.5
hsa-miR-205-5p
0.976
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000624243
Biotype: lincRNA
Gene id: ENSG00000280065
Gene Name: CTA-796E4.5
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
22733-22749
0.025
3
8mer
23273-23293
0.017
0
7mer
20870-20893
0.004
0
7mer
13223-13238
0.003
2
6mer
24311-24336
0.002
4
6mer
28644-28670
0.002
0
6mer
28035-28053
0.002
4
7mer
8486-8502
0.002
1
6mer
22418-22439
0.002
2
6mer
29594-29608
0.002
3
6mer
12001-12023
0.001
1
6mer
10784-10809
0.001
4
6mer
29052-29074
0.001
1
6mer
15189-15207
0.001
1
6mer
7284-7297
0.001
0
6mer
8979-8995
0.001
0
6mer
22539-22563
0.001
Not Conserved
6mer
2794-2811
0.001
0
6mer
28340-28366
0.001
Not Conserved
6mer
30127-30150
0.001
0
6mer
30214-30230
0.000
Not Conserved
RP11-53O19.3
hsa-miR-205-5p
0.975
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000607056
Biotype: lincRNA
Gene id: ENSG00000272335
Gene Name: RP11-53O19.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
1980-1993
0.051
1
7mer
1184-1205
0.012
1
7mer
278-301
0.008
0
CTD-3064H18.4
hsa-miR-205-5p
0.975
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000316807
Biotype: antisense
Gene id: ENSG00000180458
Gene Name: CTD-3064H18.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
331-351
0.063
1
6mer
205-227
0.004
0
6mer
1384-1408
0.003
1
XLOC_000221
hsa-miR-205-5p
0.975
mTTBlnEmP

Gene Details
Chromosome: chr1
Transcript: TCONS_00002046
Biotype: transcript isomorph
Gene id: XLOC_000221
Gene Name: XLOC_000221
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
199-225
0.067
1
6mer
329-350
0.004
0
PCBP1-AS1
hsa-miR-205-5p
0.974
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000435880
Biotype: antisense
Gene id: ENSG00000179818
Gene Name: PCBP1-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
13-31
0.068
1
6mer
1250-1275
0.002
1
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