LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-205-5p


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Gene
miRNA
Score
DIANA Links
RP11-91J3.2
hsa-miR-205-5p
0.985
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000509058
Biotype: lincRNA
Gene id: ENSG00000250042
Gene Name: RP11-91J3.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
16-39
0.048
2
8mer
223-246
0.031
4
LINC01221
hsa-miR-205-5p
0.985
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000432488
Biotype: lincRNA
Gene id: ENSG00000235492
Gene Name: LINC01221
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
621-645
0.079
1
LHFPL3-AS1
hsa-miR-205-5p
0.985
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000411448
Biotype: antisense
Gene id: ENSG00000226869
Gene Name: LHFPL3-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
151-175
0.065
4
7mer
361-386
0.011
3
6mer
790-814
0.003
0
RP11-151A6.4
hsa-miR-205-5p
0.984
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000608779
Biotype: sense_intronic
Gene id: ENSG00000224356
Gene Name: RP11-151A6.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
579-599
0.063
1
7mer
85-109
0.010
0
6mer
482-503
0.006
2
XLOC_000540
hsa-miR-205-5p
0.984
mTTBlnEmP

Gene Details
Chromosome: chr1
Transcript: TCONS_00001252
Biotype: transcript isomorph
Gene id: XLOC_000540
Gene Name: XLOC_000540
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Brain Normal/Primary
- Skeletal Muscle Normal/Primary


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
993-1010
0.078
0
RP11-549B18.1
hsa-miR-205-5p
0.984
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000565978
Biotype: antisense
Gene id: ENSG00000259985
Gene Name: RP11-549B18.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
44-66
0.066
3
6mer
251-272
0.012
8
RP1-90G24.8
hsa-miR-205-5p
0.984
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000426354
Biotype: lincRNA
Gene id: ENSG00000230120
Gene Name: RP1-90G24.8
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
523-544
0.078
1
RP11-218I7.2
hsa-miR-205-5p
0.984
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000437881
Biotype: lincRNA
Gene id: ENSG00000228739
Gene Name: RP11-218I7.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
66-92
0.073
1
6mer
100-121
0.005
0
RP11-347I19.7
hsa-miR-205-5p
0.984
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000613093
Biotype: lincRNA
Gene id: ENSG00000274292
Gene Name: RP11-347I19.7
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2137-2154
0.053
8
6mer
2449-2475
0.009
7
7mer
1461-1480
0.008
8
6mer
92-117
0.004
4
6mer
1673-1681
0.003
5
TPTEP1
hsa-miR-205-5p
0.984
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000588424
Biotype: lincRNA
Gene id: ENSG00000100181
Gene Name: TPTEP1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1501-1525
0.052
1
6mer
220-244
0.010
1
6mer
924-932
0.010
1
6mer
212-239
0.006
0
RP11-57H12.5
hsa-miR-205-5p
0.983
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000623609
Biotype: antisense
Gene id: ENSG00000228852
Gene Name: RP11-57H12.5
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
131-158
0.077
1
RP11-426C22.7
hsa-miR-205-5p
0.983
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000620963
Biotype: lincRNA
Gene id: ENSG00000273582
Gene Name: RP11-426C22.7
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
216-236
0.077
1
MAGI2-AS3
hsa-miR-205-5p
0.983
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000452320
Biotype: retained_intron
Gene id: ENSG00000234456
Gene Name: MAGI2-AS3
UCSC graphic:
Expression:
  Cell Line Tissue Category
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
HMEpC Mammary Gland Normal/Primary


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
8313-8332
0.068
1
6mer
7944-7969
0.004
1
7mer
5262-5279
0.003
1
6mer
2376-2389
0.001
0
6mer
1383-1405
0.001
1
XLOC_006613
hsa-miR-205-5p
0.983
mTTBlnEmP

Gene Details
Chromosome: chr7
Transcript: TCONS_00013975
Biotype: transcript isomorph
Gene id: XLOC_006613
Gene Name: XLOC_006613
UCSC graphic: -
Expression:
  Cell Line Tissue Category
HeLa Cervix Cancer/Malignant
A549 Lung Cancer/Malignant
- Prostate Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
342-363
0.077
1
RP11-420J11.2
hsa-miR-205-5p
0.983
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000488262
Biotype: lincRNA
Gene id: ENSG00000241696
Gene Name: RP11-420J11.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
33-50
0.044
Not Conserved
7mer
326-343
0.018
2
8mer
48-66
0.015
0
XLOC_013660
hsa-miR-205-5p
0.983
mTTBlnEmP

Gene Details
Chromosome: chr20
Transcript: TCONS_00028321
Biotype: transcript isomorph
Gene id: XLOC_013660
Gene Name: XLOC_013660
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
138-163
0.065
1
7mer
187-206
0.012
0
XLOC_010123
hsa-miR-205-5p
0.982
mTTBlnEmP

Gene Details
Chromosome: chr12
Transcript: TCONS_00020213
Biotype: transcript isomorph
Gene id: XLOC_010123
Gene Name: XLOC_010123
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
716-739
0.055
4
7mer
209-222
0.012
1
7mer
970-988
0.004
0
6mer
2233-2242
0.003
2
6mer
1016-1031
0.002
1
RP11-42A4.1
hsa-miR-205-5p
0.982
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000504840
Biotype: lincRNA
Gene id: ENSG00000248749
Gene Name: RP11-42A4.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
665-689
0.039
8
7mer
138-154
0.032
3
6mer
99-120
0.006
3
XLOC_001229
hsa-miR-205-5p
0.982
mTTBlnEmP

Gene Details
Chromosome: chr1
Transcript: TCONS_00001844
Biotype: transcript isomorph
Gene id: XLOC_001229
Gene Name: XLOC_001229
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
259-286
0.068
1
6mer
244-260
0.008
2
RP11-60A8.1
hsa-miR-205-5p
0.981
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000513379
Biotype: lincRNA
Gene id: ENSG00000249743
Gene Name: RP11-60A8.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
- Kidney Normal/Primary
- Prostate Normal/Primary


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
764-788
0.075
5
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