LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-205-5p


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Gene
miRNA
Score
DIANA Links
TTTY4B
hsa-miR-205-5p
0.992
mTTBlnEmP

Gene Details
Chromosome: Y
Transcript: ENST00000420149
Biotype: lincRNA
Gene id: ENSG00000235412
Gene Name: TTTY4B
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
24-46
0.058
0
7mer
1228-1248
0.031
0
TTTY4
hsa-miR-205-5p
0.992
mTTBlnEmP

Gene Details
Chromosome: Y
Transcript: ENST00000436568
Biotype: lincRNA
Gene id: ENSG00000226906
Gene Name: TTTY4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
24-46
0.058
0
7mer
1228-1248
0.031
0
XLOC_008332
hsa-miR-205-5p
0.992
mTTBlnEmP

Gene Details
Chromosome: chrY
Transcript: TCONS_00017595
Biotype: transcript isomorph
Gene id: XLOC_008332
Gene Name: XLOC_008332
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1300-1322
0.058
0
7mer
98-118
0.031
0
RP1-225E12.3
hsa-miR-205-5p
0.991
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000612486
Biotype: processed_transcript
Gene id: ENSG00000272446
Gene Name: RP1-225E12.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
472-493
0.049
8
7mer
751-762
0.020
8
7mer
388-406
0.020
11
RP5-1121A15.3
hsa-miR-205-5p
0.991
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000427073
Biotype: lincRNA
Gene id: ENSG00000230033
Gene Name: RP5-1121A15.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
189-208
0.088
0
RP11-164O23.7
hsa-miR-205-5p
0.991
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000442684
Biotype: lincRNA
Gene id: ENSG00000243636
Gene Name: RP11-164O23.7
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
709-731
0.044
1
8mer
270-294
0.036
2
6mer
532-557
0.004
3
6mer
52-73
0.003
0
XLOC_004611
hsa-miR-205-5p
0.990
mTTBlnEmP

Gene Details
Chromosome: chr5
Transcript: TCONS_00010144
Biotype: transcript isomorph
Gene id: XLOC_004611
Gene Name: XLOC_004611
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
106-124
0.086
0
MIR4534
hsa-miR-205-5p
0.990
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000623111
Biotype: sense_overlapping
Gene id: ENSG00000279010
Gene Name: MIR4534
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
18786-18812
0.018
7
7mer
35091-35104
0.010
11
8mer
21302-21322
0.005
0
7mer
3990-4014
0.005
2
7mer
52608-52628
0.003
0
7mer
39187-39206
0.003
Not Conserved
8mer+wobble
49825-49843
0.003
1
7mer
8436-8463
0.003
5
6mer
36216-36236
0.002
10
7mer
43571-43595
0.002
1
7mer
45104-45126
0.002
0
6mer
15896-15921
0.002
1
7mer
38484-38511
0.002
1
6mer
33131-33144
0.002
3
6mer
47863-47883
0.002
6
6mer
27002-27027
0.001
1
8mer+wobble
39353-39374
0.001
0
6mer
7352-7356
0.001
1
6mer
6622-6638
0.001
0
6mer
14634-14660
0.001
1
6mer
28144-28167
0.001
3
7mer
23346-23371
0.001
1
6mer
51865-51892
0.001
4
6mer
36420-36445
0.001
1
7mer
29741-29758
0.001
2
6mer
23251-23273
0.001
1
6mer
18048-18071
0.001
1
6mer
48851-48861
0.001
0
7mer
39197-39222
0.001
1
6mer
27135-27154
0.001
2
6mer
52730-52754
0.001
1
6mer
44712-44729
0.001
2
6mer
49996-50019
0.001
3
8mer+mismatch
36220-36240
0.001
7
6mer
38064-38085
0.001
Not Conserved
6mer
17459-17479
0.001
2
6mer
36550-36570
0.000
1
6mer
50205-50225
0.000
2
6mer
43619-43638
0.000
0
6mer
34180-34207
0.000
Not Conserved
6mer
27032-27055
0.000
0
RP11-478H13.1
hsa-miR-205-5p
0.989
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000456082
Biotype: lincRNA
Gene id: ENSG00000236716
Gene Name: RP11-478H13.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
273-289
0.080
3
6mer
448-468
0.005
0
XLOC_000633
hsa-miR-205-5p
0.989
mTTBlnEmP

Gene Details
Chromosome: chr1
Transcript: TCONS_00001335
Biotype: transcript isomorph
Gene id: XLOC_000633
Gene Name: XLOC_000633
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Liver Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
3039-3058
0.032
5
8mer
3442-3466
0.022
3
8mer
5993-6019
0.019
2
7mer
5246-5262
0.005
2
6mer
204-218
0.003
1
6mer
7001-7023
0.002
1
6mer
2036-2049
0.002
1
RP11-55L3.1
hsa-miR-205-5p
0.988
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000491608
Biotype: lincRNA
Gene id: ENSG00000250791
Gene Name: RP11-55L3.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
279-296
0.083
1
RP11-290K4.2
hsa-miR-205-5p
0.988
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000488999
Biotype: lincRNA
Gene id: ENSG00000242536
Gene Name: RP11-290K4.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
36-58
0.083
3
RP1-225E12.3
hsa-miR-205-5p
0.988
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000616537
Biotype: processed_transcript
Gene id: ENSG00000272446
Gene Name: RP1-225E12.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
546-567
0.047
8
7mer
462-480
0.018
11
7mer
825-836
0.018
8
MIR663AHG
hsa-miR-205-5p
0.987
mTTBlnEmP

Gene Details
Chromosome: 20
Transcript: ENST00000609202
Biotype: lincRNA
Gene id: ENSG00000227195
Gene Name: MIR663AHG
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
- Lung Normal/Primary
- Testes Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
596-614
0.070
1
7mer
182-200
0.012
0
PWRN1
hsa-miR-205-5p
0.986
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000564898
Biotype: lincRNA
Gene id: ENSG00000259905
Gene Name: PWRN1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
- Kidney Normal/Primary
- Liver Normal/Primary
Fibroblasts Lung Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
143-168
0.081
0
XLOC_011160
hsa-miR-205-5p
0.986
mTTBlnEmP

Gene Details
Chromosome: chr15
Transcript: TCONS_00023293
Biotype: transcript isomorph
Gene id: XLOC_011160
Gene Name: XLOC_011160
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Liver Normal/Primary
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
311-338
0.049
3
7mer
285-310
0.032
5
RP11-7F18.2
hsa-miR-205-5p
0.986
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000607397
Biotype: lincRNA
Gene id: ENSG00000271966
Gene Name: RP11-7F18.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
1024-1043
0.073
0
6mer
900-924
0.008
7
LOC284581
hsa-miR-205-5p
0.986
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: NR_046098.1
Biotype: lincRNA
Gene id: NR_046098.1 (gene)
Gene Name: LOC284581
UCSC graphic: -
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
254-267
0.040
1
7mer
1569-1590
0.024
1
6mer
2179-2205
0.013
1
6mer
527-548
0.004
0
RP11-466L17.1
hsa-miR-205-5p
0.986
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000422374
Biotype: lincRNA
Gene id: ENSG00000234810
Gene Name: RP11-466L17.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
3433-3449
0.038
0
7mer
3564-3591
0.015
1
8mer
3085-3104
0.014
1
7mer
823-845
0.009
1
6mer
3136-3160
0.002
0
6mer
1407-1427
0.001
1
6mer
1642-1656
0.001
1
6mer
2774-2789
0.001
Not Conserved
AF127936.5
hsa-miR-205-5p
0.985
mTTBlnEmP

Gene Details
Chromosome: 21
Transcript: ENST00000435315
Biotype: lincRNA
Gene id: ENSG00000226751
Gene Name: AF127936.5
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
K562 Blood Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Kidney Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- White Blood Cell Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2-29
0.075
0
6mer
517-543
0.004
4
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