LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-205-5p


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Gene
miRNA
Score
DIANA Links
XLOC_003686
hsa-miR-205-5p
0.999
mTTBlnEmP

Gene Details
Chromosome: chr4
Transcript: TCONS_00008252
Biotype: transcript isomorph
Gene id: XLOC_003686
Gene Name: XLOC_003686
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Colon Normal/Primary
- Prostate Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
84-111
0.131
9
RP3-323A16.1
hsa-miR-205-5p
0.999
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000623959
Biotype: antisense
Gene id: ENSG00000279184
Gene Name: RP3-323A16.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
6407-6432
0.028
0
9mer
1720-1744
0.016
1
9mer
43205-43220
0.014
1
8mer
7604-7630
0.010
0
9mer
23991-24012
0.008
1
7mer
6610-6625
0.005
0
7mer
25547-25563
0.005
1
7mer
7854-7874
0.004
0
7mer
24906-24916
0.003
0
7mer
31940-31955
0.002
Not Conserved
7mer
40928-40948
0.002
1
6mer
33455-33459
0.002
Not Conserved
6mer
3277-3284
0.002
2
6mer
5642-5662
0.002
0
6mer
23644-23663
0.002
1
6mer
16702-16714
0.002
1
6mer
23195-23215
0.002
Not Conserved
6mer
16848-16865
0.001
4
6mer
15306-15320
0.001
1
6mer
49866-49885
0.001
0
6mer
46283-46304
0.001
0
6mer
9624-9639
0.001
0
6mer
33989-34003
0.001
0
6mer
36764-36790
0.001
1
6mer
40611-40630
0.001
1
6mer
16312-16338
0.001
Not Conserved
6mer
12074-12099
0.001
1
6mer
32508-32532
0.001
Not Conserved
6mer
25033-25051
0.001
0
6mer
43276-43296
0.001
0
6mer
9730-9750
0.001
1
6mer
51587-51601
0.001
1
6mer
50726-50748
0.001
0
6mer
1492-1519
0.001
1
6mer
1770-1793
0.001
3
6mer
32580-32602
0.000
Not Conserved
6mer
32660-32679
0.000
Not Conserved
6mer
32518-32540
0.000
Not Conserved
6mer
32542-32560
0.000
Not Conserved
6mer
32665-32690
0.000
Not Conserved
RP11-805L22.3
hsa-miR-205-5p
0.999
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000577970
Biotype: lincRNA
Gene id: ENSG00000263567
Gene Name: RP11-805L22.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
283-306
0.052
0
7mer
420-441
0.036
0
6mer
385-406
0.016
0
6mer
152-173
0.013
0
6mer
252-273
0.010
0
RP11-553L6.5
hsa-miR-205-5p
0.999
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000570269
Biotype: lincRNA
Gene id: ENSG00000259976
Gene Name: RP11-553L6.5
UCSC graphic:
Expression:
  Cell Line Tissue Category
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
26-41
0.127
15
LINC01474
hsa-miR-205-5p
0.999
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000449235
Biotype: lincRNA
Gene id: ENSG00000236849
Gene Name: LINC01474
UCSC graphic:
Expression:
  Cell Line Tissue Category
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
372-398
0.067
1
8mer
455-474
0.057
1
RP11-440L14.1
hsa-miR-205-5p
0.999
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000503185
Biotype: antisense
Gene id: ENSG00000249592
Gene Name: RP11-440L14.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
486-504
0.123
1
LOC100129917
hsa-miR-205-5p
0.999
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: NR_036512.1
Biotype: lincRNA
Gene id: NR_036512.1 (gene)
Gene Name: LOC100129917
UCSC graphic: -
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
486-504
0.122
1
LINC01474
hsa-miR-205-5p
0.999
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000423171
Biotype: lincRNA
Gene id: ENSG00000236849
Gene Name: LINC01474
UCSC graphic:
Expression:
  Cell Line Tissue Category
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
368-394
0.070
1
8mer
451-470
0.049
1
XLOC_009783
hsa-miR-205-5p
0.999
mTTBlnEmP

Gene Details
Chromosome: chr12
Transcript: TCONS_00020451
Biotype: transcript isomorph
Gene id: XLOC_009783
Gene Name: XLOC_009783
UCSC graphic: -
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
- Brain Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1325-1344
0.119
0
RP11-805F19.2
hsa-miR-205-5p
0.999
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000583946
Biotype: lincRNA
Gene id: ENSG00000263635
Gene Name: RP11-805F19.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
442-465
0.115
0
6mer
308-329
0.004
0
RP11-440L14.1
hsa-miR-205-5p
0.999
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000503405
Biotype: antisense
Gene id: ENSG00000249592
Gene Name: RP11-440L14.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
389-407
0.118
1
XLOC_011436
hsa-miR-205-5p
0.999
mTTBlnEmP

Gene Details
Chromosome: chr15
Transcript: TCONS_00023638
Biotype: transcript isomorph
Gene id: XLOC_011436
Gene Name: XLOC_011436
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
361-387
0.093
2
8mer
164-184
0.025
1
AC006548.28
hsa-miR-205-5p
0.999
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000623130
Biotype: sense_overlapping
Gene id: ENSG00000280156
Gene Name: AC006548.28
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
3504-3528
0.016
1
8mer
37067-37084
0.009
1
7mer
22998-23017
0.007
2
7mer
64734-64753
0.006
1
8mer
40473-40494
0.006
2
7mer
50800-50815
0.005
Not Conserved
7mer
18548-18572
0.005
1
7mer
49553-49569
0.004
Not Conserved
8mer+wobble
50415-50439
0.003
Not Conserved
7mer
13930-13949
0.003
0
6mer
1078-1096
0.002
1
6mer
84039-84056
0.002
0
8mer+wobble
19858-19881
0.002
1
6mer
38799-38822
0.002
6
6mer
617-640
0.002
1
7mer
82416-82442
0.002
1
6mer
28133-28158
0.002
0
6mer
77227-77252
0.002
0
6mer
40952-40963
0.002
1
6mer
53775-53794
0.002
Not Conserved
6mer
35508-35535
0.002
3
7mer
6031-6047
0.002
Not Conserved
6mer
36775-36797
0.002
0
6mer
28540-28563
0.002
0
6mer
54186-54211
0.002
Not Conserved
6mer
21813-21839
0.002
2
6mer
45275-45287
0.001
1
6mer
10101-10122
0.001
1
6mer
77633-77655
0.001
0
6mer
35392-35411
0.001
3
6mer
12187-12206
0.001
1
6mer
44355-44367
0.001
1
6mer
4918-4939
0.001
3
6mer
13258-13278
0.001
1
6mer
51615-51639
0.001
Not Conserved
7mer
50720-50733
0.001
Not Conserved
6mer
58900-58925
0.001
1
6mer
11666-11688
0.001
0
6mer
15834-15856
0.001
1
6mer
33162-33182
0.001
0
6mer
48269-48288
0.001
Not Conserved
6mer
10719-10737
0.001
2
6mer
7766-7790
0.001
1
6mer
62671-62689
0.001
1
6mer
60486-60513
0.001
1
6mer
22660-22684
0.001
1
6mer
11524-11542
0.001
0
6mer
21793-21808
0.000
1
6mer
10689-10708
0.000
1
MIR663AHG
hsa-miR-205-5p
0.998
mTTBlnEmP

Gene Details
Chromosome: 20
Transcript: ENST00000598448
Biotype: lincRNA
Gene id: ENSG00000227195
Gene Name: MIR663AHG
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
- Lung Normal/Primary
- Testes Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
595-613
0.102
1
7mer
260-278
0.015
0
LINC01347
hsa-miR-205-5p
0.998
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000411733
Biotype: retained_intron
Gene id: ENSG00000214837
Gene Name: LINC01347
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
480-507
0.116
0
LINC00475
hsa-miR-205-5p
0.998
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000444476
Biotype: lincRNA
Gene id: ENSG00000225511
Gene Name: LINC00475
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
Fibroblasts Lung Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
- Lung Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
- Prostate Normal/Primary


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
11-36
0.104
0
6mer
49-63
0.013
0
RASGRF2-AS1
hsa-miR-205-5p
0.998
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000505107
Biotype: antisense
Gene id: ENSG00000251450
Gene Name: RASGRF2-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Ovary Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
404-422
0.098
1
7mer
542-566
0.009
0
6mer
447-473
0.004
1
6mer
68-94
0.003
Not Conserved
RP11-346D14.1
hsa-miR-205-5p
0.998
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000561320
Biotype: lincRNA
Gene id: ENSG00000259380
Gene Name: RP11-346D14.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
1539-1564
0.049
0
8mer
345-371
0.032
0
7mer
100-120
0.020
0
7mer
1350-1365
0.008
Not Conserved
6mer
2049-2066
0.003
Not Conserved
7mer
1270-1283
0.002
0
RP11-669I1.1
hsa-miR-205-5p
0.998
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000580403
Biotype: lincRNA
Gene id: ENSG00000260569
Gene Name: RP11-669I1.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
351-371
0.114
3
DYX1C1-CCPG1
hsa-miR-205-5p
0.998
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000565113
Biotype: processed_transcript
Gene id: ENSG00000261771
Gene Name: DYX1C1-CCPG1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1260-1282
0.032
6
8mer
2619-2641
0.026
7
8mer
3458-3483
0.023
5
7mer
1839-1860
0.010
4
6mer
4436-4459
0.010
11
7mer
3676-3690
0.010
4
6mer
2448-2466
0.002
7
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