LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-205-5p


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Gene
miRNA
Score
DIANA Links
RMST
hsa-miR-205-5p
0.957
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000538559
Biotype: lincRNA
Gene id: ENSG00000255794
Gene Name: RMST
UCSC graphic:
Expression:
  Cell Line Tissue Category
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
644-668
0.024
8
7mer
1995-2008
0.020
8
8mer
1720-1745
0.014
6
6mer
1439-1458
0.002
2
6mer
1730-1756
0.002
8
CTD-3162L10.1
hsa-miR-205-5p
0.957
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000590845
Biotype: lincRNA
Gene id: ENSG00000267053
Gene Name: CTD-3162L10.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
299-314
0.055
1
6mer
275-300
0.006
0
AC112721.1
hsa-miR-205-5p
0.956
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000409162
Biotype: lincRNA
Gene id: ENSG00000222022
Gene Name: AC112721.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
106-125
0.042
3
7mer
114-141
0.019
1
RP11-267C16.1
hsa-miR-205-5p
0.956
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000578152
Biotype: lincRNA
Gene id: ENSG00000227115
Gene Name: RP11-267C16.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2869-2892
0.038
1
7mer
1072-1094
0.010
2
7mer
2796-2806
0.009
1
6mer
926-947
0.002
1
6mer
1218-1233
0.002
1
RP1-290I10.3
hsa-miR-205-5p
0.956
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000420389
Biotype: lincRNA
Gene id: ENSG00000228478
Gene Name: RP1-290I10.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
404-426
0.061
2
PWRN1
hsa-miR-205-5p
0.956
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000568019
Biotype: lincRNA
Gene id: ENSG00000259905
Gene Name: PWRN1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
- Kidney Normal/Primary
- Liver Normal/Primary
Fibroblasts Lung Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
132-151
0.061
0
XLOC_007690
hsa-miR-205-5p
0.956
mTTBlnEmP

Gene Details
Chromosome: chr9
Transcript: TCONS_00015562
Biotype: transcript isomorph
Gene id: XLOC_007690
Gene Name: XLOC_007690
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
312-336
0.027
1
6mer
2938-2958
0.014
1
6mer
212-239
0.012
1
6mer
1336-1357
0.007
1
RP11-67L3.4
hsa-miR-205-5p
0.955
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000455380
Biotype: antisense
Gene id: ENSG00000233203
Gene Name: RP11-67L3.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
75-99
0.061
1
LINC00222
hsa-miR-205-5p
0.955
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000430898
Biotype: lincRNA
Gene id: ENSG00000203801
Gene Name: LINC00222
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
201-222
0.055
1
6mer
270-289
0.005
2
CTD-3162L10.1
hsa-miR-205-5p
0.955
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000593173
Biotype: lincRNA
Gene id: ENSG00000267053
Gene Name: CTD-3162L10.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
248-263
0.055
1
6mer
224-249
0.006
0
KCNJ2-AS1
hsa-miR-205-5p
0.955
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000590966
Biotype: antisense
Gene id: ENSG00000267365
Gene Name: KCNJ2-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
183-206
0.043
3
7mer
303-319
0.010
1
7mer
275-297
0.007
2
HAGLR
hsa-miR-205-5p
0.953
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000456876
Biotype: antisense
Gene id: ENSG00000224189
Gene Name: HAGLR
UCSC graphic:
Expression:
  Cell Line Tissue Category
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
3-21
0.051
2
6mer
64-85
0.009
5
ARHGAP19-SLIT1
hsa-miR-205-5p
0.953
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: NR_037909.1
Biotype: sense
Gene id: NR_037909.1 (gene)
Gene Name: ARHGAP19-SLIT1
UCSC graphic: -
Expression:
  Cell Line Tissue Category
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
266-291
0.056
11
6mer
417-436
0.004
1
CTD-3162L10.1
hsa-miR-205-5p
0.953
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000586488
Biotype: lincRNA
Gene id: ENSG00000267053
Gene Name: CTD-3162L10.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
361-376
0.055
1
6mer
337-362
0.005
0
XLOC_012811
hsa-miR-205-5p
0.953
mTTBlnEmP

Gene Details
Chromosome: chr18
Transcript: TCONS_00026485
Biotype: transcript isomorph
Gene id: XLOC_012811
Gene Name: XLOC_012811
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
14-32
0.060
1
CTD-2215L10.1
hsa-miR-205-5p
0.953
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000506519
Biotype: antisense
Gene id: ENSG00000250619
Gene Name: CTD-2215L10.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
186-208
0.033
1
8mer
309-330
0.022
1
6mer
166-184
0.005
2
LINC00347
hsa-miR-205-5p
0.953
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000451336
Biotype: lincRNA
Gene id: ENSG00000236678
Gene Name: LINC00347
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Lymph Node Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
98-119
0.060
8
XLOC_011730
hsa-miR-205-5p
0.952
mTTBlnEmP

Gene Details
Chromosome: chr16
Transcript: TCONS_00024847
Biotype: transcript isomorph
Gene id: XLOC_011730
Gene Name: XLOC_011730
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
229-255
0.060
2
XLOC_003840
hsa-miR-205-5p
0.952
mTTBlnEmP

Gene Details
Chromosome: chr4
Transcript: TCONS_00008388
Biotype: transcript isomorph
Gene id: XLOC_003840
Gene Name: XLOC_003840
UCSC graphic: -
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
- Lung Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
186-204
0.022
0
8mer
252-272
0.014
1
8mer
320-340
0.008
0
8mer
388-408
0.006
0
8mer
451-474
0.005
0
7mer
1570-1587
0.003
Not Conserved
6mer
1575-1596
0.002
1
HAGLR
hsa-miR-205-5p
0.952
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000552156
Biotype: antisense
Gene id: ENSG00000224189
Gene Name: HAGLR
UCSC graphic:
Expression:
  Cell Line Tissue Category
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
3-21
0.049
2
6mer
64-85
0.011
5
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