LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-203a-3p


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Gene
miRNA
Score
DIANA Links
FAM157A
hsa-miR-203a-3p
0.929
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000437428
Biotype: lincRNA
Gene id: ENSG00000236438
Gene Name: FAM157A
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-203a-3p
Sequence: gugaaauguuuaggaccacuag
MirBase ID: MIMAT0000264
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
18-33
0.022
0
6mer
115-136
0.018
0
6mer
654-677
0.013
0
TTN-AS1
hsa-miR-203a-3p
0.929
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000591867
Biotype: antisense
Gene id: ENSG00000237298
Gene Name: TTN-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
HMEpC Mammary Gland Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-203a-3p
Sequence: gugaaauguuuaggaccacuag
MirBase ID: MIMAT0000264
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
162-185
0.048
11
6mer
206-224
0.005
2
XLOC_012528
hsa-miR-203a-3p
0.929
mTTBlnEmP

Gene Details
Chromosome: chr17
Transcript: TCONS_00025700
Biotype: transcript isomorph
Gene id: XLOC_012528
Gene Name: XLOC_012528
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-203a-3p
Sequence: gugaaauguuuaggaccacuag
MirBase ID: MIMAT0000264
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
86-105
0.046
7
6mer
1015-1037
0.006
1
RP11-723G8.1
hsa-miR-203a-3p
0.928
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000563639
Biotype: lincRNA
Gene id: ENSG00000260457
Gene Name: RP11-723G8.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-203a-3p
Sequence: gugaaauguuuaggaccacuag
MirBase ID: MIMAT0000264
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
176-200
0.052
1
NEAT1
hsa-miR-203a-3p
0.928
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000501122
Biotype: lincRNA
Gene id: ENSG00000245532
Gene Name: NEAT1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-203a-3p
Sequence: gugaaauguuuaggaccacuag
MirBase ID: MIMAT0000264
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
22691-22704
0.013
7
8mer
8807-8830
0.008
1
8mer
16177-16193
0.004
0
7mer
13602-13625
0.003
1
6mer
9883-9908
0.003
1
6mer
10933-10958
0.003
1
7mer
15857-15879
0.003
0
6mer
18699-18724
0.003
2
6mer
2898-2918
0.002
1
6mer
3366-3378
0.002
Not Conserved
6mer
9067-9079
0.002
0
6mer
16527-16544
0.002
1
6mer
6363-6385
0.002
1
6mer
2005-2030
0.002
0
6mer
18812-18831
0.001
0
RP11-356O9.2
hsa-miR-203a-3p
0.927
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000553425
Biotype: lincRNA
Gene id: ENSG00000259087
Gene Name: RP11-356O9.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-203a-3p
Sequence: gugaaauguuuaggaccacuag
MirBase ID: MIMAT0000264
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
337-359
0.052
4
LINC01140
hsa-miR-203a-3p
0.927
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000490006
Biotype: lincRNA
Gene id: ENSG00000267272
Gene Name: LINC01140
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-203a-3p
Sequence: gugaaauguuuaggaccacuag
MirBase ID: MIMAT0000264
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
379-401
0.029
5
8mer
793-803
0.012
1
6mer
1065-1091
0.011
9
XLOC_010706
hsa-miR-203a-3p
0.927
mTTBlnEmP

Gene Details
Chromosome: chr13
Transcript: TCONS_00021520
Biotype: transcript isomorph
Gene id: XLOC_010706
Gene Name: XLOC_010706
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-203a-3p
Sequence: gugaaauguuuaggaccacuag
MirBase ID: MIMAT0000264
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
30-47
0.034
1
7mer
375-394
0.014
0
6mer
2980-2990
0.005
0
AF131215.4
hsa-miR-203a-3p
0.927
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000531549
Biotype: sense_intronic
Gene id: ENSG00000254556
Gene Name: AF131215.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-203a-3p
Sequence: gugaaauguuuaggaccacuag
MirBase ID: MIMAT0000264
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1350-1375
0.022
0
7mer
170-189
0.015
1
6mer
86-111
0.009
1
6mer
816-838
0.006
2
CTC-261N6.3
hsa-miR-203a-3p
0.927
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000505348
Biotype: lincRNA
Gene id: ENSG00000248195
Gene Name: CTC-261N6.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-203a-3p
Sequence: gugaaauguuuaggaccacuag
MirBase ID: MIMAT0000264
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
750-762
0.038
3
6mer
452-463
0.008
1
6mer
261-284
0.007
2
CTD-2336O2.1
hsa-miR-203a-3p
0.927
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000517959
Biotype: antisense
Gene id: ENSG00000253982
Gene Name: CTD-2336O2.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-203a-3p
Sequence: gugaaauguuuaggaccacuag
MirBase ID: MIMAT0000264
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
565-574
0.052
1
RP11-817O13.8
hsa-miR-203a-3p
0.925
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000563278
Biotype: lincRNA
Gene id: ENSG00000260274
Gene Name: RP11-817O13.8
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-203a-3p
Sequence: gugaaauguuuaggaccacuag
MirBase ID: MIMAT0000264
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1251-1272
0.044
4
7mer
1046-1062
0.008
1
RP11-967K21.1
hsa-miR-203a-3p
0.925
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000617468
Biotype: antisense
Gene id: ENSG00000247934
Gene Name: RP11-967K21.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-203a-3p
Sequence: gugaaauguuuaggaccacuag
MirBase ID: MIMAT0000264
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
24-40
0.045
2
7mer
1384-1403
0.007
3
RP11-600K15.1
hsa-miR-203a-3p
0.925
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000518540
Biotype: lincRNA
Gene id: ENSG00000253658
Gene Name: RP11-600K15.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-203a-3p
Sequence: gugaaauguuuaggaccacuag
MirBase ID: MIMAT0000264
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
83-104
0.037
1
7mer
330-343
0.007
0
6mer
234-259
0.007
3
RP11-583F2.2
hsa-miR-203a-3p
0.925
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000583416
Biotype: lincRNA
Gene id: ENSG00000265912
Gene Name: RP11-583F2.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-203a-3p
Sequence: gugaaauguuuaggaccacuag
MirBase ID: MIMAT0000264
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2118-2136
0.036
1
6mer
1997-2014
0.008
1
6mer
271-291
0.008
1
RP11-1094M14.5
hsa-miR-203a-3p
0.925
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000592908
Biotype: sense_intronic
Gene id: ENSG00000267074
Gene Name: RP11-1094M14.5
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant


miRNA Details
Name: hsa-miR-203a-3p
Sequence: gugaaauguuuaggaccacuag
MirBase ID: MIMAT0000264
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
796-818
0.032
0
6mer
305-314
0.014
1
6mer
694-713
0.006
0
LOC284581
hsa-miR-203a-3p
0.924
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: NR_046098.1
Biotype: lincRNA
Gene id: NR_046098.1 (gene)
Gene Name: LOC284581
UCSC graphic: -
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-203a-3p
Sequence: gugaaauguuuaggaccacuag
MirBase ID: MIMAT0000264
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
353-366
0.019
1
6mer
1640-1659
0.019
1
7mer
984-1009
0.008
0
6mer
2051-2075
0.006
0
XLOC_001317
hsa-miR-203a-3p
0.924
mTTBlnEmP

Gene Details
Chromosome: chr2
Transcript: TCONS_00003544
Biotype: transcript isomorph
Gene id: XLOC_001317
Gene Name: XLOC_001317
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
Fibroblasts Lung Normal/Primary
- Lung Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-203a-3p
Sequence: gugaaauguuuaggaccacuag
MirBase ID: MIMAT0000264
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1654-1678
0.028
0
7mer
177-201
0.007
1
7mer
1398-1417
0.006
0
7mer
1200-1209
0.006
0
6mer
806-830
0.004
1
RP11-290L1.2
hsa-miR-203a-3p
0.924
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000547721
Biotype: antisense
Gene id: ENSG00000257839
Gene Name: RP11-290L1.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-203a-3p
Sequence: gugaaauguuuaggaccacuag
MirBase ID: MIMAT0000264
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
275-294
0.035
3
6mer
642-659
0.010
3
6mer
521-531
0.007
2
RP11-103C16.2
hsa-miR-203a-3p
0.923
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000417390
Biotype: antisense
Gene id: ENSG00000227945
Gene Name: RP11-103C16.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-203a-3p
Sequence: gugaaauguuuaggaccacuag
MirBase ID: MIMAT0000264
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
262-286
0.038
3
6mer
563-573
0.013
9
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