LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-203a-3p


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Gene
miRNA
Score
DIANA Links
XLOC_007221
hsa-miR-203a-3p
0.937
mTTBlnEmP

Gene Details
Chromosome: chr8
Transcript: TCONS_00014564
Biotype: transcript isomorph
Gene id: XLOC_007221
Gene Name: XLOC_007221
UCSC graphic: -
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant


miRNA Details
Name: hsa-miR-203a-3p
Sequence: gugaaauguuuaggaccacuag
MirBase ID: MIMAT0000264
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
122-141
0.035
1
7mer
1422-1448
0.015
3
6mer
1547-1568
0.005
2
RP11-556O5.6
hsa-miR-203a-3p
0.936
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000594215
Biotype: lincRNA
Gene id: ENSG00000268955
Gene Name: RP11-556O5.6
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-203a-3p
Sequence: gugaaauguuuaggaccacuag
MirBase ID: MIMAT0000264
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
298-313
0.055
1
LINC01122
hsa-miR-203a-3p
0.936
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000452840
Biotype: lincRNA
Gene id: ENSG00000233723
Gene Name: LINC01122
UCSC graphic:
Expression:
  Cell Line Tissue Category
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-203a-3p
Sequence: gugaaauguuuaggaccacuag
MirBase ID: MIMAT0000264
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
3525-3534
0.019
0
7mer
310-321
0.016
8
7mer
3169-3179
0.009
1
6mer
835-857
0.005
5
6mer
2382-2393
0.003
6
6mer
1291-1318
0.003
2
RP11-419I17.1
hsa-miR-203a-3p
0.936
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000602979
Biotype: lincRNA
Gene id: ENSG00000270154
Gene Name: RP11-419I17.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-203a-3p
Sequence: gugaaauguuuaggaccacuag
MirBase ID: MIMAT0000264
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
349-364
0.055
1
CCDC26
hsa-miR-203a-3p
0.936
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000446592
Biotype: lincRNA
Gene id: ENSG00000229140
Gene Name: CCDC26
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-203a-3p
Sequence: gugaaauguuuaggaccacuag
MirBase ID: MIMAT0000264
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
123-142
0.035
1
7mer
1423-1449
0.015
3
6mer
1548-1569
0.005
2
XLOC_011448
hsa-miR-203a-3p
0.936
mTTBlnEmP

Gene Details
Chromosome: chr15
Transcript: TCONS_00023648
Biotype: transcript isomorph
Gene id: XLOC_011448
Gene Name: XLOC_011448
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
K562 Blood Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Kidney Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-203a-3p
Sequence: gugaaauguuuaggaccacuag
MirBase ID: MIMAT0000264
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1911-1927
0.018
5
6mer
218-227
0.006
1
6mer
9909-9928
0.006
1
7mer
3607-3625
0.005
1
6mer
2315-2327
0.003
4
6mer
6473-6490
0.003
4
6mer
3424-3436
0.003
4
8mer
6118-6137
0.003
0
6mer
1069-1088
0.002
1
6mer
6811-6825
0.002
0
6mer
4065-4091
0.002
1
6mer
1533-1550
0.002
1
6mer
3368-3386
0.001
1
XLOC_006828
hsa-miR-203a-3p
0.936
mTTBlnEmP

Gene Details
Chromosome: chr8
Transcript: TCONS_00014743
Biotype: transcript isomorph
Gene id: XLOC_006828
Gene Name: XLOC_006828
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-203a-3p
Sequence: gugaaauguuuaggaccacuag
MirBase ID: MIMAT0000264
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1362-1378
0.028
1
7mer
1046-1066
0.008
Not Conserved
6mer
1615-1627
0.005
1
6mer
1657-1678
0.005
1
6mer
682-692
0.003
1
6mer
814-840
0.003
1
6mer
1205-1222
0.002
1
LINC00461
hsa-miR-203a-3p
0.935
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000500197
Biotype: lincRNA
Gene id: ENSG00000245526
Gene Name: LINC00461
UCSC graphic:
Expression:
  Cell Line Tissue Category
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-203a-3p
Sequence: gugaaauguuuaggaccacuag
MirBase ID: MIMAT0000264
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
8-14
0.052
8
6mer
992-1010
0.003
1
LINC01330
hsa-miR-203a-3p
0.935
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000459923
Biotype: lincRNA
Gene id: ENSG00000244227
Gene Name: LINC01330
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-203a-3p
Sequence: gugaaauguuuaggaccacuag
MirBase ID: MIMAT0000264
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
580-601
0.036
7
7mer
580-605
0.008
9
6mer
1456-1477
0.007
3
6mer
1371-1397
0.003
1
CTC-493L21.1
hsa-miR-203a-3p
0.935
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000506471
Biotype: lincRNA
Gene id: ENSG00000250544
Gene Name: CTC-493L21.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-203a-3p
Sequence: gugaaauguuuaggaccacuag
MirBase ID: MIMAT0000264
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
85-97
0.028
0
8mer
603-620
0.019
1
6mer
269-294
0.005
1
6mer
948-971
0.003
2
AQP4-AS1
hsa-miR-203a-3p
0.935
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000568797
Biotype: antisense
Gene id: ENSG00000260372
Gene Name: AQP4-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-203a-3p
Sequence: gugaaauguuuaggaccacuag
MirBase ID: MIMAT0000264
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1673-1694
0.016
10
6mer
2244-2254
0.015
8
6mer
1888-1910
0.013
10
6mer
860-879
0.003
1
6mer
1266-1285
0.002
1
6mer
1433-1453
0.002
Not Conserved
6mer
1127-1138
0.002
0
6mer
1137-1151
0.002
1
XLOC_004452
hsa-miR-203a-3p
0.935
mTTBlnEmP

Gene Details
Chromosome: chr5
Transcript: TCONS_00009253
Biotype: transcript isomorph
Gene id: XLOC_004452
Gene Name: XLOC_004452
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-203a-3p
Sequence: gugaaauguuuaggaccacuag
MirBase ID: MIMAT0000264
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
85-97
0.028
0
8mer
603-620
0.019
1
6mer
269-294
0.005
1
6mer
948-971
0.003
2
RP11-96K19.4
hsa-miR-203a-3p
0.935
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000562952
Biotype: sense_overlapping
Gene id: ENSG00000261654
Gene Name: RP11-96K19.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
HeLa Cervix Cancer/Malignant


miRNA Details
Name: hsa-miR-203a-3p
Sequence: gugaaauguuuaggaccacuag
MirBase ID: MIMAT0000264
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
4345-4363
0.012
1
6mer
994-1012
0.012
1
6mer
164-180
0.011
0
6mer
1377-1397
0.009
1
6mer
2627-2639
0.006
1
6mer
1370-1384
0.003
1
6mer
2829-2848
0.001
Not Conserved
RP11-10C24.2
hsa-miR-203a-3p
0.934
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000605502
Biotype: lincRNA
Gene id: ENSG00000271324
Gene Name: RP11-10C24.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
HeLa Cervix Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-203a-3p
Sequence: gugaaauguuuaggaccacuag
MirBase ID: MIMAT0000264
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
375-395
0.034
3
6mer
359-373
0.012
4
6mer
301-322
0.008
3
RP11-350F4.2
hsa-miR-203a-3p
0.933
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000553202
Biotype: lincRNA
Gene id: ENSG00000257742
Gene Name: RP11-350F4.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-203a-3p
Sequence: gugaaauguuuaggaccacuag
MirBase ID: MIMAT0000264
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
4512-4524
0.022
2
6mer
4300-4319
0.006
5
6mer
383-397
0.006
1
8mer
3286-3305
0.005
2
6mer
171-194
0.005
1
6mer
1616-1637
0.003
1
7mer
1312-1328
0.003
0
6mer
3149-3168
0.001
1
6mer
3369-3389
0.001
1
6mer
3091-3113
0.001
1
CTD-2306M10.1
hsa-miR-203a-3p
0.932
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000602471
Biotype: lincRNA
Gene id: ENSG00000270107
Gene Name: CTD-2306M10.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-203a-3p
Sequence: gugaaauguuuaggaccacuag
MirBase ID: MIMAT0000264
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
271-294
0.048
9
6mer
567-577
0.005
1
LINC01016
hsa-miR-203a-3p
0.930
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000506222
Biotype: lincRNA
Gene id: ENSG00000249346
Gene Name: LINC01016
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Breast Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-203a-3p
Sequence: gugaaauguuuaggaccacuag
MirBase ID: MIMAT0000264
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
31-44
0.048
1
6mer
318-340
0.003
Not Conserved
6mer
2181-2191
0.002
0
RP11-354I13.2
hsa-miR-203a-3p
0.930
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000565506
Biotype: lincRNA
Gene id: ENSG00000261436
Gene Name: RP11-354I13.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-203a-3p
Sequence: gugaaauguuuaggaccacuag
MirBase ID: MIMAT0000264
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
308-332
0.024
1
7mer
735-752
0.023
0
6mer
768-788
0.006
0
XLOC_003374
hsa-miR-203a-3p
0.929
mTTBlnEmP

Gene Details
Chromosome: chr3
Transcript: TCONS_00006736
Biotype: transcript isomorph
Gene id: XLOC_003374
Gene Name: XLOC_003374
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-203a-3p
Sequence: gugaaauguuuaggaccacuag
MirBase ID: MIMAT0000264
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
220-239
0.043
5
7mer
360-379
0.010
1
CTD-2639E6.9
hsa-miR-203a-3p
0.929
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000599784
Biotype: lincRNA
Gene id: ENSG00000267898
Gene Name: CTD-2639E6.9
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-203a-3p
Sequence: gugaaauguuuaggaccacuag
MirBase ID: MIMAT0000264
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
761-771
0.053
8
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