LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-203a-3p


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Gene
miRNA
Score
DIANA Links
XLOC_002443
hsa-miR-203a-3p
0.944
mTTBlnEmP

Gene Details
Chromosome: chr2
Transcript: TCONS_00003473
Biotype: transcript isomorph
Gene id: XLOC_002443
Gene Name: XLOC_002443
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-203a-3p
Sequence: gugaaauguuuaggaccacuag
MirBase ID: MIMAT0000264
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
127-146
0.030
2
7mer
461-474
0.012
1
6mer
28-46
0.009
1
6mer
200-215
0.006
0
RP11-521L9.2
hsa-miR-203a-3p
0.943
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000568179
Biotype: sense_intronic
Gene id: ENSG00000266801
Gene Name: RP11-521L9.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-203a-3p
Sequence: gugaaauguuuaggaccacuag
MirBase ID: MIMAT0000264
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
511-536
0.031
1
7mer
423-436
0.016
2
6mer
574-585
0.010
3
LINC00461
hsa-miR-203a-3p
0.943
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000505030
Biotype: lincRNA
Gene id: ENSG00000245526
Gene Name: LINC00461
UCSC graphic:
Expression:
  Cell Line Tissue Category
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-203a-3p
Sequence: gugaaauguuuaggaccacuag
MirBase ID: MIMAT0000264
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
8-14
0.054
8
6mer
992-1010
0.002
1
PARD6G-AS1
hsa-miR-203a-3p
0.943
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000588226
Biotype: antisense
Gene id: ENSG00000267270
Gene Name: PARD6G-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-203a-3p
Sequence: gugaaauguuuaggaccacuag
MirBase ID: MIMAT0000264
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
441-462
0.033
1
6mer
1014-1033
0.010
1
6mer
654-676
0.009
1
6mer
515-533
0.004
0
LINC00461
hsa-miR-203a-3p
0.942
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000511014
Biotype: lincRNA
Gene id: ENSG00000245526
Gene Name: LINC00461
UCSC graphic:
Expression:
  Cell Line Tissue Category
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-203a-3p
Sequence: gugaaauguuuaggaccacuag
MirBase ID: MIMAT0000264
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
7-13
0.054
8
6mer
991-1009
0.003
1
RP5-1116H23.5
hsa-miR-203a-3p
0.942
mTTBlnEmP

Gene Details
Chromosome: 20
Transcript: ENST00000617644
Biotype: lincRNA
Gene id: ENSG00000276768
Gene Name: RP5-1116H23.5
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-203a-3p
Sequence: gugaaauguuuaggaccacuag
MirBase ID: MIMAT0000264
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
35-56
0.056
2
LOH12CR2
hsa-miR-203a-3p
0.942
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: NR_024061.1
Biotype: lincRNA
Gene id: NR_024061.1 (gene)
Gene Name: LOH12CR2
UCSC graphic: -
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
A549 Lung Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-203a-3p
Sequence: gugaaauguuuaggaccacuag
MirBase ID: MIMAT0000264
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
8-28
0.052
3
6mer
954-969
0.004
2
XLOC_010020
hsa-miR-203a-3p
0.941
mTTBlnEmP

Gene Details
Chromosome: chr12
Transcript: TCONS_00020168
Biotype: transcript isomorph
Gene id: XLOC_010020
Gene Name: XLOC_010020
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Kidney Normal/Primary
- Liver Normal/Primary
HepG2 Liver Cancer/Malignant
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-203a-3p
Sequence: gugaaauguuuaggaccacuag
MirBase ID: MIMAT0000264
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
6-26
0.052
3
6mer
952-967
0.004
2
LOH12CR2
hsa-miR-203a-3p
0.941
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000381800
Biotype: lincRNA
Gene id: ENSG00000205791
Gene Name: LOH12CR2
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-203a-3p
Sequence: gugaaauguuuaggaccacuag
MirBase ID: MIMAT0000264
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
10-30
0.052
3
6mer
956-971
0.004
2
CMB9-55A18.1
hsa-miR-203a-3p
0.941
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000601906
Biotype: antisense
Gene id: ENSG00000269570
Gene Name: CMB9-55A18.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-203a-3p
Sequence: gugaaauguuuaggaccacuag
MirBase ID: MIMAT0000264
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
252-278
0.015
1
7mer
465-486
0.012
1
7mer
977-991
0.011
5
6mer
588-615
0.009
9
6mer
572-584
0.005
8
6mer
1387-1403
0.005
1
XLOC_003555
hsa-miR-203a-3p
0.940
mTTBlnEmP

Gene Details
Chromosome: chr4
Transcript: TCONS_00008800
Biotype: transcript isomorph
Gene id: XLOC_003555
Gene Name: XLOC_003555
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Heart Normal/Primary
- Lymph Node Normal/Primary


miRNA Details
Name: hsa-miR-203a-3p
Sequence: gugaaauguuuaggaccacuag
MirBase ID: MIMAT0000264
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
3375-3391
0.016
3
8mer
1030-1046
0.012
1
8mer
2846-2861
0.011
1
6mer
399-417
0.004
1
6mer
3555-3571
0.004
1
6mer
3231-3249
0.003
1
6mer
2969-2989
0.002
1
6mer
2039-2066
0.002
0
6mer
1685-1706
0.002
0
RP11-1007G5.2
hsa-miR-203a-3p
0.940
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000525706
Biotype: antisense
Gene id: ENSG00000254588
Gene Name: RP11-1007G5.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-203a-3p
Sequence: gugaaauguuuaggaccacuag
MirBase ID: MIMAT0000264
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
234-257
0.023
0
7mer
1102-1120
0.019
7
8mer
658-669
0.013
1
XLOC_012535
hsa-miR-203a-3p
0.940
mTTBlnEmP

Gene Details
Chromosome: chr17
Transcript: TCONS_00025245
Biotype: transcript isomorph
Gene id: XLOC_012535
Gene Name: XLOC_012535
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-203a-3p
Sequence: gugaaauguuuaggaccacuag
MirBase ID: MIMAT0000264
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
59-78
0.028
0
6mer
5703-5719
0.006
4
8mer
1391-1410
0.006
1
7mer
3346-3366
0.003
1
6mer
3140-3150
0.003
2
6mer
4765-4782
0.003
3
6mer
529-541
0.002
0
6mer
4180-4200
0.002
1
6mer
2416-2429
0.002
0
6mer
1298-1314
0.002
0
RP11-543D5.1
hsa-miR-203a-3p
0.940
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000454285
Biotype: lincRNA
Gene id: ENSG00000227947
Gene Name: RP11-543D5.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-203a-3p
Sequence: gugaaauguuuaggaccacuag
MirBase ID: MIMAT0000264
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
361-375
0.036
8
6mer
456-481
0.013
7
6mer
57-75
0.007
1
XLOC_005224
hsa-miR-203a-3p
0.939
mTTBlnEmP

Gene Details
Chromosome: chr6
Transcript: TCONS_00011763
Biotype: transcript isomorph
Gene id: XLOC_005224
Gene Name: XLOC_005224
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-203a-3p
Sequence: gugaaauguuuaggaccacuag
MirBase ID: MIMAT0000264
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2078-2104
0.019
1
8mer
2493-2503
0.017
1
7mer
2693-2717
0.011
1
6mer
517-534
0.005
1
6mer
1014-1033
0.003
1
6mer
1516-1535
0.002
0
RP11-660M5.1
hsa-miR-203a-3p
0.939
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000604448
Biotype: lincRNA
Gene id: ENSG00000271172
Gene Name: RP11-660M5.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-203a-3p
Sequence: gugaaauguuuaggaccacuag
MirBase ID: MIMAT0000264
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
173-189
0.039
1
6mer
299-321
0.008
3
6mer
473-487
0.008
1
XLOC_009480
hsa-miR-203a-3p
0.939
mTTBlnEmP

Gene Details
Chromosome: chr11
Transcript: TCONS_00019680
Biotype: transcript isomorph
Gene id: XLOC_009480
Gene Name: XLOC_009480
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Kidney Normal/Primary


miRNA Details
Name: hsa-miR-203a-3p
Sequence: gugaaauguuuaggaccacuag
MirBase ID: MIMAT0000264
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
165-181
0.055
1
RP5-908M14.5
hsa-miR-203a-3p
0.938
mTTBlnEmP

Gene Details
Chromosome: 20
Transcript: ENST00000622414
Biotype: antisense
Gene id: ENSG00000233017
Gene Name: RP5-908M14.5
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-203a-3p
Sequence: gugaaauguuuaggaccacuag
MirBase ID: MIMAT0000264
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
496-521
0.055
1
LINC00440
hsa-miR-203a-3p
0.938
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000446579
Biotype: lincRNA
Gene id: ENSG00000234660
Gene Name: LINC00440
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-203a-3p
Sequence: gugaaauguuuaggaccacuag
MirBase ID: MIMAT0000264
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
583-596
0.033
0
8mer
351-369
0.016
0
6mer
230-243
0.007
2
XLOC_007486
hsa-miR-203a-3p
0.937
mTTBlnEmP

Gene Details
Chromosome: chr9
Transcript: TCONS_00016660
Biotype: transcript isomorph
Gene id: XLOC_007486
Gene Name: XLOC_007486
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Breast Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-203a-3p
Sequence: gugaaauguuuaggaccacuag
MirBase ID: MIMAT0000264
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2528-2545
0.027
9
6mer
2689-2698
0.008
1
6mer
2365-2385
0.008
4
7mer
2218-2231
0.007
0
6mer
1939-1954
0.005
2
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