LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-203a-3p


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Gene
miRNA
Score
DIANA Links
RP11-1008C21.1
hsa-miR-203a-3p
0.952
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000558897
Biotype: lincRNA
Gene id: ENSG00000259225
Gene Name: RP11-1008C21.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-203a-3p
Sequence: gugaaauguuuaggaccacuag
MirBase ID: MIMAT0000264
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
306-320
0.059
7
DLX6-AS1
hsa-miR-203a-3p
0.951
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000430027
Biotype: antisense
Gene id: ENSG00000231764
Gene Name: DLX6-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
HepG2 Liver Cancer/Malignant


miRNA Details
Name: hsa-miR-203a-3p
Sequence: gugaaauguuuaggaccacuag
MirBase ID: MIMAT0000264
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
8857-8867
0.012
6
8mer
12507-12525
0.009
2
6mer
11226-11250
0.005
7
6mer
585-597
0.004
4
7mer
4299-4314
0.004
0
7mer
5607-5622
0.003
0
6mer
710-734
0.003
1
8mer
2487-2510
0.003
1
6mer
1295-1307
0.002
1
6mer
9353-9363
0.002
4
6mer
2995-3017
0.002
0
6mer
3598-3625
0.002
0
6mer
3209-3228
0.001
1
6mer
5351-5370
0.001
1
6mer
11446-11469
0.001
0
6mer
1961-1984
0.001
0
6mer
4051-4064
0.001
1
6mer
11156-11179
0.001
1
6mer
11190-11212
0.001
Not Conserved
MAST4-IT1
hsa-miR-203a-3p
0.950
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000514241
Biotype: sense_intronic
Gene id: ENSG00000249057
Gene Name: MAST4-IT1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-203a-3p
Sequence: gugaaauguuuaggaccacuag
MirBase ID: MIMAT0000264
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
57-79
0.032
6
8mer
88-98
0.027
3
TTN-AS1
hsa-miR-203a-3p
0.950
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000589391
Biotype: antisense
Gene id: ENSG00000237298
Gene Name: TTN-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
HMEpC Mammary Gland Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-203a-3p
Sequence: gugaaauguuuaggaccacuag
MirBase ID: MIMAT0000264
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
427-450
0.045
11
7mer
107-131
0.010
2
6mer
471-489
0.004
2
XLOC_011006
hsa-miR-203a-3p
0.949
mTTBlnEmP

Gene Details
Chromosome: chr14
Transcript: TCONS_00022727
Biotype: transcript isomorph
Gene id: XLOC_011006
Gene Name: XLOC_011006
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-203a-3p
Sequence: gugaaauguuuaggaccacuag
MirBase ID: MIMAT0000264
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
387-401
0.028
4
8mer
85-94
0.017
0
7mer
99-121
0.013
3
LINC00470
hsa-miR-203a-3p
0.948
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000584090
Biotype: lincRNA
Gene id: ENSG00000132204
Gene Name: LINC00470
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
A549 Lung Cancer/Malignant
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-203a-3p
Sequence: gugaaauguuuaggaccacuag
MirBase ID: MIMAT0000264
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
108-123
0.038
1
7mer
1031-1050
0.008
0
7mer
257-283
0.005
Not Conserved
6mer
996-1007
0.004
0
6mer
955-970
0.003
1
BDNF-AS
hsa-miR-203a-3p
0.948
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000500662
Biotype: antisense
Gene id: ENSG00000245573
Gene Name: BDNF-AS
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-203a-3p
Sequence: gugaaauguuuaggaccacuag
MirBase ID: MIMAT0000264
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1413-1435
0.053
7
6mer
553-564
0.005
2
RP11-15E1.5
hsa-miR-203a-3p
0.948
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000619851
Biotype: lincRNA
Gene id: ENSG00000274893
Gene Name: RP11-15E1.5
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-203a-3p
Sequence: gugaaauguuuaggaccacuag
MirBase ID: MIMAT0000264
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
402-418
0.028
0
6mer
1814-1833
0.009
0
6mer
1198-1208
0.007
0
6mer
424-448
0.006
0
6mer
1407-1419
0.005
0
6mer
1258-1282
0.003
0
MLIP-AS1
hsa-miR-203a-3p
0.948
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000613661
Biotype: antisense
Gene id: ENSG00000235050
Gene Name: MLIP-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-203a-3p
Sequence: gugaaauguuuaggaccacuag
MirBase ID: MIMAT0000264
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
7-27
0.053
0
6mer
164-190
0.005
1
LOC100507387
hsa-miR-203a-3p
0.947
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: NR_038402.1
Biotype: sense
Gene id: NR_038402.1 (gene)
Gene Name: LOC100507387
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-203a-3p
Sequence: gugaaauguuuaggaccacuag
MirBase ID: MIMAT0000264
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
914-936
0.058
1
TTN-AS1
hsa-miR-203a-3p
0.947
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000588257
Biotype: antisense
Gene id: ENSG00000237298
Gene Name: TTN-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
HMEpC Mammary Gland Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-203a-3p
Sequence: gugaaauguuuaggaccacuag
MirBase ID: MIMAT0000264
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
427-450
0.044
11
7mer
107-131
0.010
2
6mer
471-489
0.004
2
PWAR6
hsa-miR-203a-3p
0.947
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000552334
Biotype: lincRNA
Gene id: ENSG00000257151
Gene Name: PWAR6
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
HUVEC Blood Vessel Normal/Primary
- Brain Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Breast Normal/Primary
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
HREpiC Kidney Normal/Primary
- Liver Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-203a-3p
Sequence: gugaaauguuuaggaccacuag
MirBase ID: MIMAT0000264
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
4517-4539
0.014
0
6mer
4125-4134
0.011
4
7mer
1341-1367
0.006
2
7mer
2930-2944
0.004
1
6mer
3282-3308
0.004
1
6mer
2282-2296
0.004
2
6mer
3497-3516
0.004
1
6mer
702-724
0.003
0
6mer
3647-3665
0.003
1
6mer
1884-1911
0.003
1
6mer
732-749
0.002
1
PCBP1-AS1
hsa-miR-203a-3p
0.947
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000599427
Biotype: antisense
Gene id: ENSG00000179818
Gene Name: PCBP1-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-203a-3p
Sequence: gugaaauguuuaggaccacuag
MirBase ID: MIMAT0000264
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
106-128
0.044
2
7mer
98-118
0.014
0
RP11-379F12.4
hsa-miR-203a-3p
0.947
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000418270
Biotype: lincRNA
Gene id: ENSG00000232638
Gene Name: RP11-379F12.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-203a-3p
Sequence: gugaaauguuuaggaccacuag
MirBase ID: MIMAT0000264
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
369-390
0.048
1
6mer
284-292
0.010
2
RP11-219B4.5
hsa-miR-203a-3p
0.947
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000546501
Biotype: antisense
Gene id: ENSG00000258256
Gene Name: RP11-219B4.5
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-203a-3p
Sequence: gugaaauguuuaggaccacuag
MirBase ID: MIMAT0000264
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
482-495
0.058
1
BDNF-AS
hsa-miR-203a-3p
0.946
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000499568
Biotype: antisense
Gene id: ENSG00000245573
Gene Name: BDNF-AS
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-203a-3p
Sequence: gugaaauguuuaggaccacuag
MirBase ID: MIMAT0000264
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2012-2034
0.054
7
6mer
553-564
0.004
2
RP11-862P13.1
hsa-miR-203a-3p
0.946
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000555850
Biotype: antisense
Gene id: ENSG00000258490
Gene Name: RP11-862P13.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-203a-3p
Sequence: gugaaauguuuaggaccacuag
MirBase ID: MIMAT0000264
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
163-184
0.022
4
8mer
442-465
0.017
0
6mer
91-116
0.011
7
6mer
151-172
0.008
4
BDNF-AS
hsa-miR-203a-3p
0.945
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000502161
Biotype: antisense
Gene id: ENSG00000245573
Gene Name: BDNF-AS
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-203a-3p
Sequence: gugaaauguuuaggaccacuag
MirBase ID: MIMAT0000264
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1255-1277
0.052
7
6mer
553-564
0.005
2
RP5-908M14.5
hsa-miR-203a-3p
0.944
mTTBlnEmP

Gene Details
Chromosome: 20
Transcript: ENST00000433121
Biotype: antisense
Gene id: ENSG00000233017
Gene Name: RP5-908M14.5
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-203a-3p
Sequence: gugaaauguuuaggaccacuag
MirBase ID: MIMAT0000264
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
429-454
0.057
1
RP4-753D4.2
hsa-miR-203a-3p
0.944
mTTBlnEmP

Gene Details
Chromosome: 20
Transcript: ENST00000412519
Biotype: antisense
Gene id: ENSG00000227599
Gene Name: RP4-753D4.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-203a-3p
Sequence: gugaaauguuuaggaccacuag
MirBase ID: MIMAT0000264
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1129-1154
0.037
7
7mer
1278-1292
0.020
3
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