LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-203a-3p


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Gene
miRNA
Score
DIANA Links
CTD-2555O16.4
hsa-miR-203a-3p
0.960
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000609125
Biotype: antisense
Gene id: ENSG00000272909
Gene Name: CTD-2555O16.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-203a-3p
Sequence: gugaaauguuuaggaccacuag
MirBase ID: MIMAT0000264
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
52-75
0.054
1
6mer
1545-1562
0.006
4
6mer
1257-1276
0.002
0
LINC01128
hsa-miR-203a-3p
0.959
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000445118
Biotype: lincRNA
Gene id: ENSG00000228794
Gene Name: LINC01128
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-203a-3p
Sequence: gugaaauguuuaggaccacuag
MirBase ID: MIMAT0000264
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
6526-6550
0.057
1
6mer
5625-5637
0.004
1
6mer
3001-3020
0.001
0
MAGEA8-AS1
hsa-miR-203a-3p
0.959
mTTBlnEmP

Gene Details
Chromosome: X
Transcript: NR_102703.1
Biotype: antisense
Gene id: NR_102703.1 (gene)
Gene Name: MAGEA8-AS1
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-203a-3p
Sequence: gugaaauguuuaggaccacuag
MirBase ID: MIMAT0000264
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
242-263
0.051
1
6mer
7-25
0.011
0
TTTY10
hsa-miR-203a-3p
0.959
mTTBlnEmP

Gene Details
Chromosome: Y
Transcript: ENST00000455084
Biotype: lincRNA
Gene id: ENSG00000229236
Gene Name: TTTY10
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-203a-3p
Sequence: gugaaauguuuaggaccacuag
MirBase ID: MIMAT0000264
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1383-1403
0.032
0
7mer
494-515
0.026
0
6mer
1277-1288
0.004
Not Conserved
DGCR5
hsa-miR-203a-3p
0.958
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000424407
Biotype: antisense
Gene id: ENSG00000237517
Gene Name: DGCR5
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-203a-3p
Sequence: gugaaauguuuaggaccacuag
MirBase ID: MIMAT0000264
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
717-736
0.037
0
6mer
373-387
0.025
0
CTB-92J24.2
hsa-miR-203a-3p
0.958
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000594230
Biotype: sense_intronic
Gene id: ENSG00000269397
Gene Name: CTB-92J24.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant


miRNA Details
Name: hsa-miR-203a-3p
Sequence: gugaaauguuuaggaccacuag
MirBase ID: MIMAT0000264
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1116-1127
0.027
0
6mer
1397-1419
0.020
0
6mer
985-1000
0.015
0
RP11-284A20.3
hsa-miR-203a-3p
0.958
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000511091
Biotype: lincRNA
Gene id: ENSG00000248443
Gene Name: RP11-284A20.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-203a-3p
Sequence: gugaaauguuuaggaccacuag
MirBase ID: MIMAT0000264
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
679-691
0.044
1
8mer
313-328
0.012
1
6mer
148-160
0.006
1
LINC01355
hsa-miR-203a-3p
0.958
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000566551
Biotype: lincRNA
Gene id: ENSG00000261326
Gene Name: LINC01355
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-203a-3p
Sequence: gugaaauguuuaggaccacuag
MirBase ID: MIMAT0000264
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
5035-5056
0.043
2
7mer
5354-5375
0.010
1
6mer
1307-1331
0.004
3
6mer
1990-2006
0.002
3
6mer
3429-3448
0.002
1
XLOC_000832
hsa-miR-203a-3p
0.958
mTTBlnEmP

Gene Details
Chromosome: chr1
Transcript: TCONS_00001492
Biotype: transcript isomorph
Gene id: XLOC_000832
Gene Name: XLOC_000832
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-203a-3p
Sequence: gugaaauguuuaggaccacuag
MirBase ID: MIMAT0000264
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
39-59
0.055
0
7mer
880-903
0.007
0
RNF219-AS1
hsa-miR-203a-3p
0.958
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000560584
Biotype: antisense
Gene id: ENSG00000234377
Gene Name: RNF219-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-203a-3p
Sequence: gugaaauguuuaggaccacuag
MirBase ID: MIMAT0000264
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2114-2130
0.022
3
7mer
1081-1106
0.014
6
6mer
1939-1965
0.011
9
7mer
2092-2113
0.009
2
6mer
731-747
0.006
6
RP11-634B7.4
hsa-miR-203a-3p
0.957
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000582218
Biotype: antisense
Gene id: ENSG00000235749
Gene Name: RP11-634B7.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-203a-3p
Sequence: gugaaauguuuaggaccacuag
MirBase ID: MIMAT0000264
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
105-127
0.062
1
RP11-589B3.6
hsa-miR-203a-3p
0.957
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000421256
Biotype: lincRNA
Gene id: ENSG00000226676
Gene Name: RP11-589B3.6
UCSC graphic:
Expression:
  Cell Line Tissue Category
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-203a-3p
Sequence: gugaaauguuuaggaccacuag
MirBase ID: MIMAT0000264
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
23-32
0.061
1
KCNMA1-AS1
hsa-miR-203a-3p
0.957
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000600782
Biotype: antisense
Gene id: ENSG00000236467
Gene Name: KCNMA1-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-203a-3p
Sequence: gugaaauguuuaggaccacuag
MirBase ID: MIMAT0000264
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
241-258
0.036
6
8mer
643-669
0.016
0
7mer
1659-1680
0.010
0
AC004951.6
hsa-miR-203a-3p
0.956
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000447643
Biotype: lincRNA
Gene id: ENSG00000228434
Gene Name: AC004951.6
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-203a-3p
Sequence: gugaaauguuuaggaccacuag
MirBase ID: MIMAT0000264
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
488-514
0.061
0
XLOC_000650
hsa-miR-203a-3p
0.955
mTTBlnEmP

Gene Details
Chromosome: chr1
Transcript: TCONS_00001363
Biotype: transcript isomorph
Gene id: XLOC_000650
Gene Name: XLOC_000650
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Colon Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-203a-3p
Sequence: gugaaauguuuaggaccacuag
MirBase ID: MIMAT0000264
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
435-457
0.061
1
RNF219-AS1
hsa-miR-203a-3p
0.955
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000606429
Biotype: antisense
Gene id: ENSG00000234377
Gene Name: RNF219-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-203a-3p
Sequence: gugaaauguuuaggaccacuag
MirBase ID: MIMAT0000264
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2310-2326
0.022
3
7mer
1277-1302
0.014
6
6mer
2135-2161
0.010
9
7mer
2288-2309
0.009
2
6mer
927-943
0.005
6
LOC101926935
hsa-miR-203a-3p
0.953
mTTBlnEmP

Gene Details
Chromosome: 20
Transcript: NR_110001.1
Biotype: sense
Gene id: NR_110001.1 (gene)
Gene Name: LOC101926935
UCSC graphic: -
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant


miRNA Details
Name: hsa-miR-203a-3p
Sequence: gugaaauguuuaggaccacuag
MirBase ID: MIMAT0000264
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
4610-4637
0.031
0
7mer
213-238
0.011
Not Conserved
6mer
4983-5007
0.009
0
6mer
2934-2953
0.007
0
6mer
4576-4601
0.003
0
XLOC_013502
hsa-miR-203a-3p
0.953
mTTBlnEmP

Gene Details
Chromosome: chr20
Transcript: TCONS_00027863
Biotype: transcript isomorph
Gene id: XLOC_013502
Gene Name: XLOC_013502
UCSC graphic: -
Expression:
  Cell Line Tissue Category
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Ovary Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-203a-3p
Sequence: gugaaauguuuaggaccacuag
MirBase ID: MIMAT0000264
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
4314-4323
0.009
0
7mer
1270-1280
0.006
0
6mer
4128-4149
0.006
0
6mer
3361-3376
0.005
0
6mer
3957-3978
0.004
0
6mer
3676-3701
0.004
0
6mer
3817-3843
0.004
0
6mer
2498-2517
0.003
0
6mer
2680-2688
0.003
0
6mer
2165-2176
0.003
0
6mer
1657-1666
0.003
0
6mer
1987-2004
0.003
0
6mer
472-491
0.002
Not Conserved
6mer
1471-1497
0.001
Not Conserved
6mer
1813-1832
0.001
0
6mer
1776-1786
0.001
Not Conserved
RP4-760C5.5
hsa-miR-203a-3p
0.953
mTTBlnEmP

Gene Details
Chromosome: 20
Transcript: ENST00000449316
Biotype: lincRNA
Gene id: ENSG00000226203
Gene Name: RP4-760C5.5
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-203a-3p
Sequence: gugaaauguuuaggaccacuag
MirBase ID: MIMAT0000264
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
4319-4328
0.009
0
7mer
1275-1285
0.006
0
6mer
4133-4154
0.006
0
6mer
3366-3381
0.004
0
6mer
3962-3983
0.004
0
6mer
3681-3706
0.004
0
6mer
3822-3848
0.004
0
6mer
2170-2181
0.003
0
6mer
2503-2522
0.003
0
6mer
2685-2693
0.003
0
6mer
1662-1671
0.003
0
6mer
1992-2009
0.003
0
6mer
477-496
0.002
Not Conserved
6mer
1476-1502
0.001
Not Conserved
6mer
1818-1837
0.001
0
6mer
1781-1791
0.001
Not Conserved
AC034110.1
hsa-miR-203a-3p
0.952
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000611889
Biotype: lincRNA
Gene id: ENSG00000276397
Gene Name: AC034110.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-203a-3p
Sequence: gugaaauguuuaggaccacuag
MirBase ID: MIMAT0000264
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2218-2230
0.039
0
8mer
2164-2186
0.017
0
6mer
1397-1416
0.003
1
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