LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-203a-3p


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Gene
miRNA
Score
DIANA Links
CTD-2336O2.1
hsa-miR-203a-3p
0.970
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000518481
Biotype: antisense
Gene id: ENSG00000253982
Gene Name: CTD-2336O2.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-203a-3p
Sequence: gugaaauguuuaggaccacuag
MirBase ID: MIMAT0000264
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
21-30
0.068
1
RP11-17M16.2
hsa-miR-203a-3p
0.970
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000581996
Biotype: antisense
Gene id: ENSG00000265778
Gene Name: RP11-17M16.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-203a-3p
Sequence: gugaaauguuuaggaccacuag
MirBase ID: MIMAT0000264
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1068-1085
0.052
8
6mer
995-1008
0.016
9
TSIX
hsa-miR-203a-3p
0.969
mTTBlnEmP

Gene Details
Chromosome: X
Transcript: ENST00000604411
Biotype: lincRNA
Gene id: ENSG00000270641
Gene Name: TSIX
UCSC graphic:
Expression:
  Cell Line Tissue Category
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-203a-3p
Sequence: gugaaauguuuaggaccacuag
MirBase ID: MIMAT0000264
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
28598-28614
0.008
2
7mer
24590-24607
0.007
0
6mer
36157-36183
0.005
4
7mer
19965-19975
0.004
1
7mer
9478-9504
0.004
1
7mer
1404-1430
0.003
1
6mer
18349-18374
0.003
1
6mer
681-700
0.003
0
6mer
832-854
0.003
2
7mer
15662-15679
0.003
Not Conserved
6mer
28989-29006
0.002
1
6mer
19079-19104
0.002
1
7mer
17039-17065
0.002
0
6mer
18055-18067
0.002
1
6mer
7744-7768
0.002
0
6mer
22561-22578
0.002
3
6mer
20073-20096
0.002
3
6mer
21447-21460
0.002
1
7mer
20118-20144
0.002
2
6mer
4228-4247
0.002
1
6mer
15069-15094
0.001
Not Conserved
6mer
18803-18818
0.001
1
6mer
8421-8442
0.001
0
6mer
28090-28116
0.001
Not Conserved
6mer
20215-20226
0.001
1
RP11-493L12.4
hsa-miR-203a-3p
0.969
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000552063
Biotype: lincRNA
Gene id: ENSG00000258181
Gene Name: RP11-493L12.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HREpiC Kidney Normal/Primary
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-203a-3p
Sequence: gugaaauguuuaggaccacuag
MirBase ID: MIMAT0000264
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
38-55
0.067
1
RP6-91H8.2
hsa-miR-203a-3p
0.968
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000561794
Biotype: lincRNA
Gene id: ENSG00000259907
Gene Name: RP6-91H8.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-203a-3p
Sequence: gugaaauguuuaggaccacuag
MirBase ID: MIMAT0000264
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
585-598
0.052
1
7mer
180-193
0.015
0
LINC01330
hsa-miR-203a-3p
0.967
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000481578
Biotype: lincRNA
Gene id: ENSG00000244227
Gene Name: LINC01330
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-203a-3p
Sequence: gugaaauguuuaggaccacuag
MirBase ID: MIMAT0000264
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
485-506
0.038
7
7mer
1963-1979
0.013
1
7mer
485-510
0.012
9
6mer
1134-1155
0.002
3
6mer
1049-1075
0.002
1
CTA-342B11.3
hsa-miR-203a-3p
0.967
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000624235
Biotype: lincRNA
Gene id: ENSG00000280370
Gene Name: CTA-342B11.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-203a-3p
Sequence: gugaaauguuuaggaccacuag
MirBase ID: MIMAT0000264
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
15010-15022
0.015
1
8mer
11191-11210
0.010
1
7mer
21656-21673
0.006
Not Conserved
6mer
641-664
0.005
2
6mer
24534-24553
0.004
0
6mer
952-976
0.003
1
6mer
20065-20078
0.003
1
7mer
13031-13039
0.002
Not Conserved
6mer
5786-5798
0.002
0
6mer
12447-12472
0.002
0
6mer
11520-11540
0.002
1
6mer
1993-2018
0.002
0
6mer
22521-22536
0.002
Not Conserved
6mer
4252-4263
0.002
0
6mer
23134-23152
0.001
Not Conserved
6mer
20640-20659
0.001
0
6mer
21383-21402
0.001
Not Conserved
6mer
10901-10917
0.001
1
6mer
13726-13750
0.001
1
6mer
15937-15956
0.001
0
6mer
13854-13874
0.001
1
RP11-223C24.2
hsa-miR-203a-3p
0.967
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000514766
Biotype: lincRNA
Gene id: ENSG00000251248
Gene Name: RP11-223C24.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-203a-3p
Sequence: gugaaauguuuaggaccacuag
MirBase ID: MIMAT0000264
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
25-43
0.066
2
CTA-941F9.10
hsa-miR-203a-3p
0.966
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000623075
Biotype: sense_overlapping
Gene id: ENSG00000280383
Gene Name: CTA-941F9.10
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-203a-3p
Sequence: gugaaauguuuaggaccacuag
MirBase ID: MIMAT0000264
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
22018-22035
0.011
1
6mer
22353-22366
0.009
6
8mer
6675-6701
0.008
0
8mer
2710-2730
0.007
0
7mer
1109-1125
0.004
0
6mer
10538-10563
0.003
4
7mer
18970-18979
0.003
1
6mer
5346-5364
0.002
1
6mer
17265-17283
0.002
1
6mer
1253-1272
0.002
0
7mer
7718-7724
0.002
0
6mer
18177-18185
0.002
1
6mer
10203-10221
0.002
1
6mer
7661-7679
0.002
0
6mer
16737-16758
0.001
1
7mer
11958-11983
0.001
0
6mer
11144-11164
0.001
1
6mer
3579-3598
0.001
0
6mer
7942-7961
0.001
1
6mer
5350-5376
0.000
Not Conserved
RP11-389C8.3
hsa-miR-203a-3p
0.966
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000607825
Biotype: lincRNA
Gene id: ENSG00000272365
Gene Name: RP11-389C8.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-203a-3p
Sequence: gugaaauguuuaggaccacuag
MirBase ID: MIMAT0000264
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
740-756
0.044
2
9mer
482-492
0.021
3
LINC00665
hsa-miR-203a-3p
0.965
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000590657
Biotype: lincRNA
Gene id: ENSG00000232677
Gene Name: LINC00665
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
HMEpC Mammary Gland Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-203a-3p
Sequence: gugaaauguuuaggaccacuag
MirBase ID: MIMAT0000264
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2465-2483
0.027
1
6mer
501-520
0.013
1
6mer
967-991
0.010
1
8mer
1242-1261
0.009
0
6mer
2438-2454
0.003
Not Conserved
6mer
864-887
0.002
Not Conserved
LINC01052
hsa-miR-203a-3p
0.965
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000437777
Biotype: lincRNA
Gene id: ENSG00000234767
Gene Name: LINC01052
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-203a-3p
Sequence: gugaaauguuuaggaccacuag
MirBase ID: MIMAT0000264
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
191-209
0.065
8
LUCAT1
hsa-miR-203a-3p
0.964
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000513492
Biotype: lincRNA
Gene id: ENSG00000248323
Gene Name: LUCAT1
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-203a-3p
Sequence: gugaaauguuuaggaccacuag
MirBase ID: MIMAT0000264
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
79-96
0.047
6
7mer
359-384
0.017
7
BDNF-AS
hsa-miR-203a-3p
0.964
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: NR_033315.1
Biotype: antisense
Gene id: NR_033315.1 (gene)
Gene Name: BDNF-AS
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-203a-3p
Sequence: gugaaauguuuaggaccacuag
MirBase ID: MIMAT0000264
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1413-1435
0.059
7
6mer
553-564
0.005
2
MBNL1-AS1
hsa-miR-203a-3p
0.963
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000608395
Biotype: antisense
Gene id: ENSG00000229619
Gene Name: MBNL1-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
HUVEC Blood Vessel Normal/Primary
HeLa Cervix Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-203a-3p
Sequence: gugaaauguuuaggaccacuag
MirBase ID: MIMAT0000264
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
3355-3374
0.024
6
8mer
1674-1686
0.015
1
7mer
169-181
0.011
1
6mer
3141-3164
0.004
6
6mer
1092-1118
0.004
3
6mer
428-451
0.003
2
6mer
1498-1506
0.003
4
CTC-325H20.2
hsa-miR-203a-3p
0.962
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000592371
Biotype: lincRNA
Gene id: ENSG00000266912
Gene Name: CTC-325H20.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-203a-3p
Sequence: gugaaauguuuaggaccacuag
MirBase ID: MIMAT0000264
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1064-1073
0.039
1
8mer
374-387
0.019
1
6mer
761-784
0.005
1
BDNF-AS
hsa-miR-203a-3p
0.962
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: NR_033312.1
Biotype: antisense
Gene id: NR_033312.1 (gene)
Gene Name: BDNF-AS
UCSC graphic: -
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-203a-3p
Sequence: gugaaauguuuaggaccacuag
MirBase ID: MIMAT0000264
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2012-2034
0.059
7
6mer
553-564
0.004
2
RP11-493L12.4
hsa-miR-203a-3p
0.961
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000547777
Biotype: lincRNA
Gene id: ENSG00000258181
Gene Name: RP11-493L12.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HREpiC Kidney Normal/Primary
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-203a-3p
Sequence: gugaaauguuuaggaccacuag
MirBase ID: MIMAT0000264
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
217-234
0.063
1
MIR133A1HG
hsa-miR-203a-3p
0.961
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000581072
Biotype: antisense
Gene id: ENSG00000265142
Gene Name: MIR133A1HG
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-203a-3p
Sequence: gugaaauguuuaggaccacuag
MirBase ID: MIMAT0000264
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1674-1694
0.020
9
6mer
153-168
0.011
6
6mer
19-37
0.009
6
6mer
3658-3677
0.005
1
7mer
2579-2589
0.005
0
6mer
3336-3358
0.003
3
6mer
2430-2445
0.003
4
6mer
3303-3317
0.003
2
6mer
1442-1465
0.003
4
7mer
1398-1412
0.002
5
BDNF-AS
hsa-miR-203a-3p
0.961
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: NR_033313.1
Biotype: antisense
Gene id: NR_033313.1 (gene)
Gene Name: BDNF-AS
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-203a-3p
Sequence: gugaaauguuuaggaccacuag
MirBase ID: MIMAT0000264
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1255-1277
0.058
7
6mer
553-564
0.005
2
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