LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-203a-3p


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Gene
miRNA
Score
DIANA Links
AC114776.3
hsa-miR-203a-3p
0.982
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000414159
Biotype: lincRNA
Gene id: ENSG00000235881
Gene Name: AC114776.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-203a-3p
Sequence: gugaaauguuuaggaccacuag
MirBase ID: MIMAT0000264
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
4341-4357
0.030
1
7mer
1955-1965
0.016
1
7mer
3870-3879
0.012
0
6mer
791-812
0.011
1
6mer
2346-2358
0.007
1
XLOC_003233
hsa-miR-203a-3p
0.982
mTTBlnEmP

Gene Details
Chromosome: chr3
Transcript: TCONS_00006631
Biotype: transcript isomorph
Gene id: XLOC_003233
Gene Name: XLOC_003233
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-203a-3p
Sequence: gugaaauguuuaggaccacuag
MirBase ID: MIMAT0000264
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
391-414
0.076
1
LINC00889
hsa-miR-203a-3p
0.981
mTTBlnEmP

Gene Details
Chromosome: X
Transcript: NR_026935.1
Biotype: lincRNA
Gene id: NR_026935.1 (gene)
Gene Name: LINC00889
UCSC graphic: -
Expression:
  Cell Line Tissue Category
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-203a-3p
Sequence: gugaaauguuuaggaccacuag
MirBase ID: MIMAT0000264
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2653-2673
0.041
1
7mer
2591-2603
0.015
0
6mer
244-264
0.010
3
6mer
2030-2051
0.005
1
6mer
300-315
0.004
0
RP1-309I22.2
hsa-miR-203a-3p
0.981
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000624184
Biotype: sense_overlapping
Gene id: ENSG00000279338
Gene Name: RP1-309I22.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-203a-3p
Sequence: gugaaauguuuaggaccacuag
MirBase ID: MIMAT0000264
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
28569-28587
0.013
2
8mer
16746-16765
0.008
1
7mer
3010-3029
0.005
1
7mer
28008-28024
0.005
4
7mer
10433-10452
0.004
0
7mer
25062-25081
0.004
5
7mer
3168-3182
0.003
4
7mer
2307-2331
0.003
4
7mer
23119-23137
0.002
1
7mer
11861-11876
0.002
1
7mer
19155-19173
0.002
0
6mer
11597-11611
0.002
3
6mer
10143-10170
0.002
2
6mer
27203-27223
0.002
1
6mer
8665-8684
0.002
1
6mer
20268-20287
0.002
1
6mer
24580-24601
0.002
1
6mer
25121-25140
0.002
6
6mer
1514-1531
0.002
1
6mer
26929-26942
0.002
1
6mer
11400-11418
0.001
1
6mer
11932-11956
0.001
5
6mer
17020-17033
0.001
0
6mer
5642-5656
0.001
0
6mer
11699-11714
0.001
1
6mer
19253-19278
0.001
0
6mer
20355-20379
0.001
0
CTC-338M12.4
hsa-miR-203a-3p
0.981
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000599439
Biotype: retained_intron
Gene id: ENSG00000233937
Gene Name: CTC-338M12.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-203a-3p
Sequence: gugaaauguuuaggaccacuag
MirBase ID: MIMAT0000264
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
31-54
0.067
4
6mer
882-909
0.006
3
6mer
949-969
0.001
Not Conserved
RP11-634B7.4
hsa-miR-203a-3p
0.980
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000449298
Biotype: antisense
Gene id: ENSG00000235749
Gene Name: RP11-634B7.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-203a-3p
Sequence: gugaaauguuuaggaccacuag
MirBase ID: MIMAT0000264
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1526-1539
0.038
1
8mer
405-427
0.024
1
6mer
1525-1535
0.013
1
CTA-796E4.5
hsa-miR-203a-3p
0.980
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000624243
Biotype: lincRNA
Gene id: ENSG00000280065
Gene Name: CTA-796E4.5
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-203a-3p
Sequence: gugaaauguuuaggaccacuag
MirBase ID: MIMAT0000264
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
14037-14046
0.015
1
6mer
208-219
0.010
4
6mer
31407-31418
0.008
3
6mer
31635-31657
0.007
1
7mer
1291-1306
0.004
1
7mer
25920-25937
0.004
1
6mer
2000-2023
0.004
4
6mer
30897-30918
0.004
2
7mer
16196-16212
0.003
Not Conserved
7mer
18667-18678
0.002
0
6mer
6187-6213
0.002
2
6mer
2388-2400
0.002
1
6mer
26187-26207
0.002
1
6mer
10284-10308
0.002
1
6mer
23114-23127
0.001
1
6mer
22409-22430
0.001
0
6mer
14770-14786
0.001
0
6mer
16588-16608
0.001
0
6mer
2025-2043
0.001
1
6mer
6222-6237
0.001
1
KB-1592A4.14
hsa-miR-203a-3p
0.979
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000417463
Biotype: lincRNA
Gene id: ENSG00000234503
Gene Name: KB-1592A4.14
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-203a-3p
Sequence: gugaaauguuuaggaccacuag
MirBase ID: MIMAT0000264
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
319-330
0.053
1
6mer
365-384
0.013
1
6mer
144-169
0.008
0
RP11-1072C15.4
hsa-miR-203a-3p
0.978
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000591628
Biotype: antisense
Gene id: ENSG00000267160
Gene Name: RP11-1072C15.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
HeLa Cervix Cancer/Malignant


miRNA Details
Name: hsa-miR-203a-3p
Sequence: gugaaauguuuaggaccacuag
MirBase ID: MIMAT0000264
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1664-1688
0.023
9
7mer
259-270
0.015
2
7mer
823-838
0.009
7
6mer
1741-1768
0.007
8
6mer
490-511
0.007
5
6mer
2303-2316
0.006
3
6mer
2388-2415
0.004
1
6mer
1316-1330
0.003
2
LOC145783
hsa-miR-203a-3p
0.977
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: NR_015419.2
Biotype: sense
Gene id: NR_015419.2 (gene)
Gene Name: LOC145783
UCSC graphic: -
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-203a-3p
Sequence: gugaaauguuuaggaccacuag
MirBase ID: MIMAT0000264
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
161-180
0.039
Not Conserved
7mer
36-54
0.024
2
6mer
183-193
0.005
1
7mer
1627-1643
0.003
0
6mer
1473-1493
0.001
0
CTB-89H12.4
hsa-miR-203a-3p
0.976
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000499521
Biotype: retained_intron
Gene id: ENSG00000230551
Gene Name: CTB-89H12.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-203a-3p
Sequence: gugaaauguuuaggaccacuag
MirBase ID: MIMAT0000264
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
279-305
0.047
9
7mer
2166-2185
0.008
9
8mer
7375-7386
0.005
0
6mer
2400-2422
0.004
8
7mer
5831-5845
0.004
0
6mer
7766-7787
0.003
1
6mer
5682-5697
0.001
1
XLOC_001199
hsa-miR-203a-3p
0.976
mTTBlnEmP

Gene Details
Chromosome: chr1
Transcript: TCONS_00001815
Biotype: transcript isomorph
Gene id: XLOC_001199
Gene Name: XLOC_001199
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
- Liver Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-203a-3p
Sequence: gugaaauguuuaggaccacuag
MirBase ID: MIMAT0000264
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
171-193
0.056
9
6mer
5548-5561
0.004
2
6mer
292-311
0.004
0
6mer
970-985
0.003
1
6mer
2080-2103
0.002
2
6mer
2533-2545
0.002
4
XLOC_013174
hsa-miR-203a-3p
0.975
mTTBlnEmP

Gene Details
Chromosome: chr19
Transcript: TCONS_00027635
Biotype: transcript isomorph
Gene id: XLOC_013174
Gene Name: XLOC_013174
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
- Brain Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
- Liver Normal/Primary
HepG2 Liver Cancer/Malignant
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
A549 Lung Cancer/Malignant
- Lymph Node Normal/Primary
HMEpC Mammary Gland Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-203a-3p
Sequence: gugaaauguuuaggaccacuag
MirBase ID: MIMAT0000264
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
199-213
0.018
0
6mer
326-349
0.016
0
6mer
987-1012
0.014
0
6mer
1049-1075
0.012
0
6mer
723-733
0.011
0
CTA-929C8.9
hsa-miR-203a-3p
0.974
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000624278
Biotype: sense_intronic
Gene id: ENSG00000279185
Gene Name: CTA-929C8.9
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-203a-3p
Sequence: gugaaauguuuaggaccacuag
MirBase ID: MIMAT0000264
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
24581-24605
0.023
3
6mer
483-509
0.003
0
6mer
24649-24664
0.003
1
6mer
11011-11028
0.003
1
7mer
12126-12143
0.003
1
6mer
6916-6940
0.002
1
6mer
19278-19296
0.002
3
6mer
7837-7853
0.002
1
6mer
8415-8426
0.002
0
6mer
9156-9181
0.002
1
6mer
3944-3967
0.002
1
6mer
3299-3317
0.002
1
6mer
17139-17157
0.002
1
7mer
1841-1859
0.002
0
6mer
4184-4202
0.002
1
6mer
12829-12844
0.002
0
6mer
9727-9743
0.002
1
6mer
10699-10712
0.002
1
6mer
15228-15246
0.002
1
6mer
7207-7231
0.001
1
6mer
9775-9792
0.001
1
6mer
8506-8533
0.001
1
6mer
16170-16193
0.001
0
6mer
15994-16013
0.001
0
6mer
18071-18086
0.001
0
RP11-397A16.3
hsa-miR-203a-3p
0.974
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000585985
Biotype: lincRNA
Gene id: ENSG00000267172
Gene Name: RP11-397A16.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-203a-3p
Sequence: gugaaauguuuaggaccacuag
MirBase ID: MIMAT0000264
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
262-278
0.055
1
7mer
971-995
0.009
1
6mer
869-886
0.006
0
LINC00475
hsa-miR-203a-3p
0.973
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000434944
Biotype: lincRNA
Gene id: ENSG00000225511
Gene Name: LINC00475
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
Fibroblasts Lung Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
- Lung Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
- Prostate Normal/Primary


miRNA Details
Name: hsa-miR-203a-3p
Sequence: gugaaauguuuaggaccacuag
MirBase ID: MIMAT0000264
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
390-413
0.054
0
6mer
197-215
0.016
0
XLOC_010052
hsa-miR-203a-3p
0.972
mTTBlnEmP

Gene Details
Chromosome: chr12
Transcript: TCONS_00020760
Biotype: transcript isomorph
Gene id: XLOC_010052
Gene Name: XLOC_010052
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-203a-3p
Sequence: gugaaauguuuaggaccacuag
MirBase ID: MIMAT0000264
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
355-369
0.023
1
8mer
2292-2302
0.017
0
6mer
343-354
0.006
1
6mer
2114-2133
0.004
4
6mer
2724-2735
0.004
Not Conserved
6mer
2706-2721
0.004
2
7mer
1696-1708
0.004
1
6mer
1937-1948
0.003
2
6mer
1179-1192
0.003
1
6mer
2256-2269
0.002
1
RP1-63G5.7
hsa-miR-203a-3p
0.972
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000445088
Biotype: sense_intronic
Gene id: ENSG00000237862
Gene Name: RP1-63G5.7
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-203a-3p
Sequence: gugaaauguuuaggaccacuag
MirBase ID: MIMAT0000264
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
1912-1930
0.055
0
7mer
1446-1469
0.010
1
6mer
1082-1103
0.003
1
XLOC_014368
hsa-miR-203a-3p
0.972
mTTBlnEmP

Gene Details
Chromosome: chr22
Transcript: TCONS_00029349
Biotype: transcript isomorph
Gene id: XLOC_014368
Gene Name: XLOC_014368
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-203a-3p
Sequence: gugaaauguuuaggaccacuag
MirBase ID: MIMAT0000264
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
1908-1926
0.055
0
7mer
1442-1465
0.010
1
6mer
1078-1099
0.003
1
RP11-65L3.2
hsa-miR-203a-3p
0.970
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000603415
Biotype: antisense
Gene id: ENSG00000270277
Gene Name: RP11-65L3.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-203a-3p
Sequence: gugaaauguuuaggaccacuag
MirBase ID: MIMAT0000264
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
150-168
0.050
6
6mer
91-113
0.010
7
7mer
477-496
0.007
2
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