LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-203a-3p


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Gene
miRNA
Score
DIANA Links
RP11-614F17.2
hsa-miR-203a-3p
0.993
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000514222
Biotype: lincRNA
Gene id: ENSG00000251676
Gene Name: RP11-614F17.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-203a-3p
Sequence: gugaaauguuuaggaccacuag
MirBase ID: MIMAT0000264
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
619-632
0.091
1
RP11-182L21.5
hsa-miR-203a-3p
0.993
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000606384
Biotype: sense_intronic
Gene id: ENSG00000272489
Gene Name: RP11-182L21.5
UCSC graphic:
Expression:
  Cell Line Tissue Category
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-203a-3p
Sequence: gugaaauguuuaggaccacuag
MirBase ID: MIMAT0000264
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1283-1306
0.037
0
8mer
608-626
0.028
0
7mer
127-148
0.013
0
6mer
634-651
0.007
1
6mer
93-106
0.006
0
RP11-1109M24.16
hsa-miR-203a-3p
0.992
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000578977
Biotype: lincRNA
Gene id: ENSG00000263609
Gene Name: RP11-1109M24.16
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-203a-3p
Sequence: gugaaauguuuaggaccacuag
MirBase ID: MIMAT0000264
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
70-86
0.031
0
8mer
314-338
0.022
0
8mer
826-843
0.020
0
6mer
319-327
0.009
0
6mer
1189-1210
0.004
Not Conserved
6mer
482-491
0.004
Not Conserved
RP11-229P13.25
hsa-miR-203a-3p
0.992
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000569497
Biotype: sense_overlapping
Gene id: ENSG00000260190
Gene Name: RP11-229P13.25
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-203a-3p
Sequence: gugaaauguuuaggaccacuag
MirBase ID: MIMAT0000264
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
159-170
0.089
1
XLOC_008924
hsa-miR-203a-3p
0.991
mTTBlnEmP

Gene Details
Chromosome: chr10
Transcript: TCONS_00018033
Biotype: transcript isomorph
Gene id: XLOC_008924
Gene Name: XLOC_008924
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-203a-3p
Sequence: gugaaauguuuaggaccacuag
MirBase ID: MIMAT0000264
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
216-233
0.066
12
7mer
92-116
0.022
9
RP11-555K2.4
hsa-miR-203a-3p
0.991
mTTBlnEmP

Gene Details
Chromosome: 21
Transcript: ENST00000623559
Biotype: lincRNA
Gene id: ENSG00000279321
Gene Name: RP11-555K2.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-203a-3p
Sequence: gugaaauguuuaggaccacuag
MirBase ID: MIMAT0000264
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
621-632
0.087
1
LINC01347
hsa-miR-203a-3p
0.989
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000411733
Biotype: retained_intron
Gene id: ENSG00000214837
Gene Name: LINC01347
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-203a-3p
Sequence: gugaaauguuuaggaccacuag
MirBase ID: MIMAT0000264
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
405-424
0.085
1
FLJ37505
hsa-miR-203a-3p
0.989
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000614177
Biotype: lincRNA
Gene id: ENSG00000256597
Gene Name: FLJ37505
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-203a-3p
Sequence: gugaaauguuuaggaccacuag
MirBase ID: MIMAT0000264
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1965-1987
0.071
0
7mer
1225-1242
0.007
1
6mer
1257-1274
0.003
2
6mer
1436-1459
0.003
0
AC073628.1
hsa-miR-203a-3p
0.989
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: NR_110286.1
Biotype: lincRNA
Gene id: NR_110286.1 (gene)
Gene Name: AC073628.1
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-203a-3p
Sequence: gugaaauguuuaggaccacuag
MirBase ID: MIMAT0000264
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
220-231
0.042
1
8mer
235-246
0.028
1
6mer
374-381
0.011
5
6mer
358-370
0.004
1
AC073628.1
hsa-miR-203a-3p
0.989
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000443419
Biotype: lincRNA
Gene id: ENSG00000233605
Gene Name: AC073628.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-203a-3p
Sequence: gugaaauguuuaggaccacuag
MirBase ID: MIMAT0000264
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
220-231
0.041
1
8mer
235-246
0.028
1
6mer
374-381
0.011
5
6mer
358-370
0.004
1
RP11-285M22.3
hsa-miR-203a-3p
0.989
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000582507
Biotype: lincRNA
Gene id: ENSG00000264262
Gene Name: RP11-285M22.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-203a-3p
Sequence: gugaaauguuuaggaccacuag
MirBase ID: MIMAT0000264
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
59-84
0.084
0
RP11-529E10.6
hsa-miR-203a-3p
0.987
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000564650
Biotype: sense_overlapping
Gene id: ENSG00000261643
Gene Name: RP11-529E10.6
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-203a-3p
Sequence: gugaaauguuuaggaccacuag
MirBase ID: MIMAT0000264
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
21-30
0.061
0
6mer
53-79
0.020
0
CTD-2620I22.7
hsa-miR-203a-3p
0.986
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000596766
Biotype: lincRNA
Gene id: ENSG00000268613
Gene Name: CTD-2620I22.7
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-203a-3p
Sequence: gugaaauguuuaggaccacuag
MirBase ID: MIMAT0000264
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
215-228
0.042
1
9mer
329-353
0.038
1
MIR4534
hsa-miR-203a-3p
0.986
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000623111
Biotype: sense_overlapping
Gene id: ENSG00000279010
Gene Name: MIR4534
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-203a-3p
Sequence: gugaaauguuuaggaccacuag
MirBase ID: MIMAT0000264
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
54021-54033
0.012
1
8mer
15187-15211
0.007
3
6mer
488-499
0.006
2
7mer
45693-45719
0.003
1
6mer
54200-54219
0.003
0
7mer
18239-18257
0.003
0
7mer
5070-5095
0.002
1
6mer
20614-20632
0.002
9
6mer
42484-42499
0.002
2
7mer
29149-29168
0.002
Not Conserved
6mer
53677-53696
0.002
Not Conserved
6mer
30925-30944
0.002
1
6mer
3741-3766
0.002
0
6mer
53360-53379
0.002
1
6mer
25952-25974
0.002
Not Conserved
6mer
9248-9270
0.002
0
6mer
1532-1549
0.002
0
6mer
6763-6786
0.001
1
6mer
42946-42965
0.001
1
6mer
44051-44075
0.001
1
6mer
44838-44860
0.001
1
6mer
26537-26558
0.001
2
6mer
39481-39503
0.001
1
6mer
31975-31998
0.001
Not Conserved
6mer
30604-30623
0.001
0
6mer
6126-6149
0.001
1
6mer
1286-1305
0.001
1
6mer
46354-46366
0.001
1
6mer
44219-44245
0.001
1
6mer
26180-26199
0.001
1
6mer
16400-16419
0.001
1
6mer
14526-14538
0.001
0
6mer
14814-14833
0.001
1
6mer
46472-46488
0.001
0
6mer
16834-16853
0.001
1
6mer
50608-50626
0.001
1
6mer
12226-12245
0.001
0
6mer
7745-7769
0.001
0
6mer
12678-12697
0.001
1
6mer
12362-12381
0.001
0
RP11-159D12.10
hsa-miR-203a-3p
0.986
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000584805
Biotype: lincRNA
Gene id: ENSG00000266290
Gene Name: RP11-159D12.10
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-203a-3p
Sequence: gugaaauguuuaggaccacuag
MirBase ID: MIMAT0000264
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
22-48
0.030
0
8mer
301-320
0.023
0
6mer
5945-5961
0.006
4
8mer
1633-1652
0.005
1
7mer
3588-3608
0.003
1
6mer
3382-3392
0.003
2
6mer
5007-5024
0.003
3
6mer
771-783
0.002
0
6mer
4422-4442
0.002
1
6mer
2658-2671
0.002
0
6mer
1540-1556
0.001
0
RP11-160E2.21
hsa-miR-203a-3p
0.985
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000584365
Biotype: sense_intronic
Gene id: ENSG00000266664
Gene Name: RP11-160E2.21
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-203a-3p
Sequence: gugaaauguuuaggaccacuag
MirBase ID: MIMAT0000264
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
28-54
0.080
0
PCBP2-OT1
hsa-miR-203a-3p
0.985
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: NR_109828.1
Biotype: sense
Gene id: NR_109828.1 (gene)
Gene Name: PCBP2-OT1
UCSC graphic: -
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-203a-3p
Sequence: gugaaauguuuaggaccacuag
MirBase ID: MIMAT0000264
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
530-539
0.059
9
6mer
216-231
0.020
9
RP11-12D24.10
hsa-miR-203a-3p
0.985
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000608422
Biotype: lincRNA
Gene id: ENSG00000272866
Gene Name: RP11-12D24.10
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-203a-3p
Sequence: gugaaauguuuaggaccacuag
MirBase ID: MIMAT0000264
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
209-220
0.064
3
6mer
475-484
0.009
1
6mer
413-425
0.006
0
LINC01194
hsa-miR-203a-3p
0.984
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000505877
Biotype: lincRNA
Gene id: ENSG00000248131
Gene Name: LINC01194
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant


miRNA Details
Name: hsa-miR-203a-3p
Sequence: gugaaauguuuaggaccacuag
MirBase ID: MIMAT0000264
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
1149-1167
0.060
1
6mer
1165-1181
0.007
1
6mer
769-784
0.007
1
6mer
866-884
0.004
0
RP11-231E19.1
hsa-miR-203a-3p
0.983
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000562796
Biotype: lincRNA
Gene id: ENSG00000260059
Gene Name: RP11-231E19.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-203a-3p
Sequence: gugaaauguuuaggaccacuag
MirBase ID: MIMAT0000264
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
536-561
0.047
1
8mer
849-867
0.018
0
7mer
1183-1193
0.007
1
6mer
1419-1431
0.004
2
6mer
1156-1173
0.001
1
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