LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-200c-3p


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Gene
miRNA
Score
DIANA Links
XLOC_010069
hsa-miR-200c-3p
0.862
mTTBlnEmP

Gene Details
Chromosome: chr12
Transcript: TCONS_00020779
Biotype: transcript isomorph
Gene id: XLOC_010069
Gene Name: XLOC_010069
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Lung Normal/Primary
- Ovary Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-200c-3p
Sequence: uaauacugccggguaaugaugga
MirBase ID: MIMAT0000617
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
53-71
0.036
0
6mer
403-424
0.004
1
TSIX
hsa-miR-200c-3p
0.862
mTTBlnEmP

Gene Details
Chromosome: X
Transcript: ENST00000604411
Biotype: lincRNA
Gene id: ENSG00000270641
Gene Name: TSIX
UCSC graphic:
Expression:
  Cell Line Tissue Category
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-200c-3p
Sequence: uaauacugccggguaaugaugga
MirBase ID: MIMAT0000617
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
20694-20717
0.006
0
7mer
18744-18769
0.006
0
7mer
33685-33699
0.005
1
7mer
30189-30205
0.003
1
6mer
36336-36353
0.003
0
7mer
2796-2810
0.002
1
6mer
24142-24166
0.002
0
6mer
2780-2803
0.002
0
6mer
33468-33492
0.002
1
6mer
22359-22380
0.002
1
6mer
10336-10356
0.001
0
6mer
13218-13235
0.001
Not Conserved
6mer
33727-33753
0.001
5
6mer
19424-19442
0.001
1
6mer
10814-10837
0.001
0
XLOC_012048
hsa-miR-200c-3p
0.862
mTTBlnEmP

Gene Details
Chromosome: chr16
Transcript: TCONS_00025089
Biotype: transcript isomorph
Gene id: XLOC_012048
Gene Name: XLOC_012048
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-200c-3p
Sequence: uaauacugccggguaaugaugga
MirBase ID: MIMAT0000617
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
30-53
0.029
0
7mer
434-449
0.012
1
CTD-2521M24.9
hsa-miR-200c-3p
0.861
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000600369
Biotype: lincRNA
Gene id: ENSG00000269640
Gene Name: CTD-2521M24.9
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-200c-3p
Sequence: uaauacugccggguaaugaugga
MirBase ID: MIMAT0000617
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
935-948
0.021
1
7mer
603-630
0.019
1
RP11-139J15.2
hsa-miR-200c-3p
0.860
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000449529
Biotype: lincRNA
Gene id: ENSG00000152487
Gene Name: RP11-139J15.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-200c-3p
Sequence: uaauacugccggguaaugaugga
MirBase ID: MIMAT0000617
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
394-414
0.024
1
7mer
458-481
0.017
1
PCAT19
hsa-miR-200c-3p
0.859
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000599801
Biotype: lincRNA
Gene id: ENSG00000267107
Gene Name: PCAT19
UCSC graphic:
Expression:
  Cell Line Tissue Category
HUVEC Blood Vessel Normal/Primary


miRNA Details
Name: hsa-miR-200c-3p
Sequence: uaauacugccggguaaugaugga
MirBase ID: MIMAT0000617
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
162-176
0.040
1
DNM3OS
hsa-miR-200c-3p
0.859
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000417354
Biotype: antisense
Gene id: ENSG00000230630
Gene Name: DNM3OS
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-200c-3p
Sequence: uaauacugccggguaaugaugga
MirBase ID: MIMAT0000617
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2748-2768
0.023
5
7mer
1200-1226
0.006
3
6mer
3885-3904
0.006
3
7mer
2117-2142
0.004
1
6mer
1770-1774
0.002
0
RP11-142O6.1
hsa-miR-200c-3p
0.859
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000584382
Biotype: sense_intronic
Gene id: ENSG00000266371
Gene Name: RP11-142O6.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-200c-3p
Sequence: uaauacugccggguaaugaugga
MirBase ID: MIMAT0000617
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
49-61
0.040
1
AC009299.2
hsa-miR-200c-3p
0.858
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000421122
Biotype: antisense
Gene id: ENSG00000235724
Gene Name: AC009299.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-200c-3p
Sequence: uaauacugccggguaaugaugga
MirBase ID: MIMAT0000617
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
50-55
0.018
1
8mer
1003-1029
0.013
1
6mer
528-554
0.009
10
LINC01189
hsa-miR-200c-3p
0.856
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000428440
Biotype: lincRNA
Gene id: ENSG00000232827
Gene Name: LINC01189
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-200c-3p
Sequence: uaauacugccggguaaugaugga
MirBase ID: MIMAT0000617
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
3195-3212
0.022
1
7mer
1341-1357
0.007
0
6mer
342-361
0.006
0
6mer
283-307
0.004
Not Conserved
RP11-111F5.8
hsa-miR-200c-3p
0.855
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000428709
Biotype: lincRNA
Gene id: ENSG00000233651
Gene Name: RP11-111F5.8
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-200c-3p
Sequence: uaauacugccggguaaugaugga
MirBase ID: MIMAT0000617
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
110-127
0.022
1
7mer
1969-1985
0.007
0
6mer
2965-2984
0.007
0
6mer
3019-3043
0.004
Not Conserved
LINC00347
hsa-miR-200c-3p
0.853
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000594461
Biotype: lincRNA
Gene id: ENSG00000236678
Gene Name: LINC00347
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Lymph Node Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-200c-3p
Sequence: uaauacugccggguaaugaugga
MirBase ID: MIMAT0000617
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
60-72
0.017
0
7mer
1413-1440
0.011
8
6mer
75-89
0.005
1
6mer
82-101
0.004
1
6mer
1236-1259
0.003
6
AP001604.3
hsa-miR-200c-3p
0.853
mTTBlnEmP

Gene Details
Chromosome: 21
Transcript: ENST00000420186
Biotype: lincRNA
Gene id: ENSG00000231236
Gene Name: AP001604.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-200c-3p
Sequence: uaauacugccggguaaugaugga
MirBase ID: MIMAT0000617
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
373-398
0.017
3
9mer
2513-2524
0.015
0
7mer
788-806
0.008
3
DLEU2
hsa-miR-200c-3p
0.852
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000235290
Biotype: antisense
Gene id: ENSG00000231607
Gene Name: DLEU2
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-200c-3p
Sequence: uaauacugccggguaaugaugga
MirBase ID: MIMAT0000617
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1416-1441
0.030
8
6mer
1207-1225
0.005
3
6mer
668-687
0.004
1
CTD-2013N24.2
hsa-miR-200c-3p
0.851
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000599467
Biotype: antisense
Gene id: ENSG00000244513
Gene Name: CTD-2013N24.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
HeLa Cervix Cancer/Malignant
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-200c-3p
Sequence: uaauacugccggguaaugaugga
MirBase ID: MIMAT0000617
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
200-224
0.039
1
FAM138A
hsa-miR-200c-3p
0.850
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000461467
Biotype: lincRNA
Gene id: ENSG00000237613
Gene Name: FAM138A
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-200c-3p
Sequence: uaauacugccggguaaugaugga
MirBase ID: MIMAT0000617
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
24-42
0.039
2
C5orf64
hsa-miR-200c-3p
0.850
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000313303
Biotype: processed_transcript
Gene id: ENSG00000178722
Gene Name: C5orf64
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-200c-3p
Sequence: uaauacugccggguaaugaugga
MirBase ID: MIMAT0000617
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
210-234
0.023
5
8mer
1972-1997
0.009
1
6mer
2645-2670
0.004
1
6mer
1688-1708
0.003
3
CTB-107G13.1
hsa-miR-200c-3p
0.847
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000422488
Biotype: antisense
Gene id: ENSG00000234715
Gene Name: CTB-107G13.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-200c-3p
Sequence: uaauacugccggguaaugaugga
MirBase ID: MIMAT0000617
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2390-2411
0.031
0
9mer
1936-1954
0.007
Not Conserved
XLOC_006415
hsa-miR-200c-3p
0.845
mTTBlnEmP

Gene Details
Chromosome: chr7
Transcript: TCONS_00013782
Biotype: transcript isomorph
Gene id: XLOC_006415
Gene Name: XLOC_006415
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
HeLa Cervix Cancer/Malignant
- Lung Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-200c-3p
Sequence: uaauacugccggguaaugaugga
MirBase ID: MIMAT0000617
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
882-907
0.015
1
7mer
17-41
0.014
1
6mer
240-267
0.007
1
6mer
424-442
0.003
Not Conserved
FLJ22763
hsa-miR-200c-3p
0.845
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000479039
Biotype: lincRNA
Gene id: ENSG00000241224
Gene Name: FLJ22763
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-200c-3p
Sequence: uaauacugccggguaaugaugga
MirBase ID: MIMAT0000617
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
170-184
0.038
4
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