LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-200c-3p


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Gene
miRNA
Score
DIANA Links
XLOC_008207
hsa-miR-200c-3p
0.875
mTTBlnEmP

Gene Details
Chromosome: chrX
Transcript: TCONS_00017361
Biotype: transcript isomorph
Gene id: XLOC_008207
Gene Name: XLOC_008207
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
- Colon Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
Fibroblasts Lung Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-200c-3p
Sequence: uaauacugccggguaaugaugga
MirBase ID: MIMAT0000617
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
381-404
0.017
9
6mer
4627-4650
0.007
0
6mer
4360-4376
0.006
2
7mer
2047-2070
0.003
1
6mer
483-505
0.003
0
6mer
3583-3605
0.003
Not Conserved
6mer
1778-1797
0.002
1
7mer
1972-1996
0.002
1
RP11-347J14.7
hsa-miR-200c-3p
0.873
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000423499
Biotype: lincRNA
Gene id: ENSG00000231140
Gene Name: RP11-347J14.7
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Lung Normal/Primary
- Ovary Normal/Primary


miRNA Details
Name: hsa-miR-200c-3p
Sequence: uaauacugccggguaaugaugga
MirBase ID: MIMAT0000617
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
394-413
0.019
0
6mer
140-157
0.016
1
6mer
1000-1026
0.007
0
RP11-710F7.3
hsa-miR-200c-3p
0.871
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000513220
Biotype: antisense
Gene id: ENSG00000249635
Gene Name: RP11-710F7.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Breast Normal/Primary
- Ovary Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-200c-3p
Sequence: uaauacugccggguaaugaugga
MirBase ID: MIMAT0000617
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
360-380
0.038
3
6mer
3095-3114
0.004
0
RP11-139J15.2
hsa-miR-200c-3p
0.871
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000444660
Biotype: lincRNA
Gene id: ENSG00000152487
Gene Name: RP11-139J15.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-200c-3p
Sequence: uaauacugccggguaaugaugga
MirBase ID: MIMAT0000617
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
257-277
0.025
1
7mer
321-344
0.017
1
RP13-20L14.6
hsa-miR-200c-3p
0.871
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000578344
Biotype: antisense
Gene id: ENSG00000265458
Gene Name: RP13-20L14.6
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-200c-3p
Sequence: uaauacugccggguaaugaugga
MirBase ID: MIMAT0000617
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
162-181
0.042
1
XXbac-B33L19.6
hsa-miR-200c-3p
0.870
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000614584
Biotype: lincRNA
Gene id: ENSG00000277017
Gene Name: XXbac-B33L19.6
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-200c-3p
Sequence: uaauacugccggguaaugaugga
MirBase ID: MIMAT0000617
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
30-56
0.042
1
RP11-139J15.2
hsa-miR-200c-3p
0.870
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000607346
Biotype: lincRNA
Gene id: ENSG00000152487
Gene Name: RP11-139J15.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-200c-3p
Sequence: uaauacugccggguaaugaugga
MirBase ID: MIMAT0000617
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
268-288
0.025
1
7mer
332-355
0.017
1
SPAG5-AS1
hsa-miR-200c-3p
0.869
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000556050
Biotype: antisense
Gene id: ENSG00000227543
Gene Name: SPAG5-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
HeLa Cervix Cancer/Malignant


miRNA Details
Name: hsa-miR-200c-3p
Sequence: uaauacugccggguaaugaugga
MirBase ID: MIMAT0000617
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
707-725
0.042
1
RP11-380B4.3
hsa-miR-200c-3p
0.869
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000617901
Biotype: lincRNA
Gene id: ENSG00000277151
Gene Name: RP11-380B4.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-200c-3p
Sequence: uaauacugccggguaaugaugga
MirBase ID: MIMAT0000617
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
37-55
0.023
2
9mer
2827-2844
0.015
1
6mer
2125-2151
0.002
0
6mer
2526-2547
0.002
1
XLOC_010491
hsa-miR-200c-3p
0.868
mTTBlnEmP

Gene Details
Chromosome: chr13
Transcript: TCONS_00021594
Biotype: transcript isomorph
Gene id: XLOC_010491
Gene Name: XLOC_010491
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Heart Normal/Primary
- Skeletal Muscle Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-200c-3p
Sequence: uaauacugccggguaaugaugga
MirBase ID: MIMAT0000617
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
413-440
0.041
0
XLOC_002300
hsa-miR-200c-3p
0.867
mTTBlnEmP

Gene Details
Chromosome: chr2
Transcript: TCONS_00004430
Biotype: transcript isomorph
Gene id: XLOC_002300
Gene Name: XLOC_002300
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-200c-3p
Sequence: uaauacugccggguaaugaugga
MirBase ID: MIMAT0000617
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
25-47
0.041
1
XLOC_014019
hsa-miR-200c-3p
0.866
mTTBlnEmP

Gene Details
Chromosome: chr21
Transcript: TCONS_00029091
Biotype: transcript isomorph
Gene id: XLOC_014019
Gene Name: XLOC_014019
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-200c-3p
Sequence: uaauacugccggguaaugaugga
MirBase ID: MIMAT0000617
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
297-317
0.021
1
6mer
281-302
0.007
6
6mer
3899-3921
0.004
Not Conserved
7mer
1658-1669
0.004
1
6mer
3815-3837
0.004
1
6mer
531-555
0.002
0
LINC00506
hsa-miR-200c-3p
0.866
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: NR_047469.1
Biotype: lincRNA
Gene id: NR_047469.1 (gene)
Gene Name: LINC00506
UCSC graphic: -
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-200c-3p
Sequence: uaauacugccggguaaugaugga
MirBase ID: MIMAT0000617
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
4124-4146
0.022
2
8mer
3675-3701
0.016
0
6mer
621-647
0.004
0
CTD-2530H12.1
hsa-miR-200c-3p
0.865
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000499390
Biotype: antisense
Gene id: ENSG00000247867
Gene Name: CTD-2530H12.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-200c-3p
Sequence: uaauacugccggguaaugaugga
MirBase ID: MIMAT0000617
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
21-39
0.041
2
RASAL2-AS1
hsa-miR-200c-3p
0.865
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000419458
Biotype: lincRNA
Gene id: ENSG00000224687
Gene Name: RASAL2-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-200c-3p
Sequence: uaauacugccggguaaugaugga
MirBase ID: MIMAT0000617
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1673-1699
0.031
3
6mer
118-144
0.005
1
6mer
1162-1188
0.005
2
XLOC_009505
hsa-miR-200c-3p
0.865
mTTBlnEmP

Gene Details
Chromosome: chr11
Transcript: TCONS_00019124
Biotype: transcript isomorph
Gene id: XLOC_009505
Gene Name: XLOC_009505
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-200c-3p
Sequence: uaauacugccggguaaugaugga
MirBase ID: MIMAT0000617
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
19-37
0.041
2
XLOC_005637
hsa-miR-200c-3p
0.864
mTTBlnEmP

Gene Details
Chromosome: chr6
Transcript: TCONS_00012107
Biotype: transcript isomorph
Gene id: XLOC_005637
Gene Name: XLOC_005637
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-200c-3p
Sequence: uaauacugccggguaaugaugga
MirBase ID: MIMAT0000617
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
47-66
0.021
0
7mer
185-202
0.014
0
6mer
57-77
0.006
0
RP11-45P15.4
hsa-miR-200c-3p
0.864
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000563989
Biotype: antisense
Gene id: ENSG00000259775
Gene Name: RP11-45P15.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-200c-3p
Sequence: uaauacugccggguaaugaugga
MirBase ID: MIMAT0000617
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
600-616
0.041
3
AF127936.7
hsa-miR-200c-3p
0.864
mTTBlnEmP

Gene Details
Chromosome: 21
Transcript: ENST00000432230
Biotype: lincRNA
Gene id: ENSG00000235609
Gene Name: AF127936.7
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-200c-3p
Sequence: uaauacugccggguaaugaugga
MirBase ID: MIMAT0000617
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
114-139
0.022
4
8mer
3576-3598
0.012
1
6mer
701-725
0.002
0
6mer
3909-3929
0.002
3
7mer
3466-3492
0.002
0
RP11-664H17.1
hsa-miR-200c-3p
0.864
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000536666
Biotype: lincRNA
Gene id: ENSG00000256287
Gene Name: RP11-664H17.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-200c-3p
Sequence: uaauacugccggguaaugaugga
MirBase ID: MIMAT0000617
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
38-55
0.041
0
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