LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-200c-3p


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Gene
miRNA
Score
DIANA Links
RP13-516M14.1
hsa-miR-200c-3p
0.958
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000566986
Biotype: lincRNA
Gene id: ENSG00000260563
Gene Name: RP13-516M14.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-200c-3p
Sequence: uaauacugccggguaaugaugga
MirBase ID: MIMAT0000617
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
490-508
0.062
1
RP11-299J3.8
hsa-miR-200c-3p
0.957
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000608756
Biotype: antisense
Gene id: ENSG00000272758
Gene Name: RP11-299J3.8
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-200c-3p
Sequence: uaauacugccggguaaugaugga
MirBase ID: MIMAT0000617
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
775-791
0.053
10
6mer
869-893
0.005
5
6mer
54-69
0.004
1
RBM26-AS1
hsa-miR-200c-3p
0.956
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000606584
Biotype: antisense
Gene id: ENSG00000227354
Gene Name: RBM26-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-200c-3p
Sequence: uaauacugccggguaaugaugga
MirBase ID: MIMAT0000617
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
925-931
0.057
1
6mer
1004-1023
0.004
0
RP11-78L16.1
hsa-miR-200c-3p
0.954
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000616578
Biotype: lincRNA
Gene id: ENSG00000278630
Gene Name: RP11-78L16.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-200c-3p
Sequence: uaauacugccggguaaugaugga
MirBase ID: MIMAT0000617
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
479-500
0.060
1
RP11-69C17.3
hsa-miR-200c-3p
0.954
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000421077
Biotype: lincRNA
Gene id: ENSG00000227912
Gene Name: RP11-69C17.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-200c-3p
Sequence: uaauacugccggguaaugaugga
MirBase ID: MIMAT0000617
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2214-2230
0.036
7
7mer
383-403
0.021
1
6mer
1980-2001
0.003
0
XLOC_004451
hsa-miR-200c-3p
0.953
mTTBlnEmP

Gene Details
Chromosome: chr5
Transcript: TCONS_00009438
Biotype: transcript isomorph
Gene id: XLOC_004451
Gene Name: XLOC_004451
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Lung Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-200c-3p
Sequence: uaauacugccggguaaugaugga
MirBase ID: MIMAT0000617
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
942-969
0.025
1
7mer
928-934
0.015
0
8mer
674-691
0.013
0
6mer
208-224
0.007
0
LINC01428
hsa-miR-200c-3p
0.949
mTTBlnEmP

Gene Details
Chromosome: 20
Transcript: ENST00000449581
Biotype: lincRNA
Gene id: ENSG00000228888
Gene Name: LINC01428
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-200c-3p
Sequence: uaauacugccggguaaugaugga
MirBase ID: MIMAT0000617
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
42-62
0.058
5
GS1-120K12.4
hsa-miR-200c-3p
0.949
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000566476
Biotype: lincRNA
Gene id: ENSG00000260976
Gene Name: GS1-120K12.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-200c-3p
Sequence: uaauacugccggguaaugaugga
MirBase ID: MIMAT0000617
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1047-1069
0.058
1
DLX6-AS1
hsa-miR-200c-3p
0.947
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000437331
Biotype: antisense
Gene id: ENSG00000231764
Gene Name: DLX6-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
HepG2 Liver Cancer/Malignant


miRNA Details
Name: hsa-miR-200c-3p
Sequence: uaauacugccggguaaugaugga
MirBase ID: MIMAT0000617
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
3614-3640
0.046
14
7mer
779-806
0.008
1
6mer
590-616
0.004
1
RP11-568N6.1
hsa-miR-200c-3p
0.946
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000561559
Biotype: lincRNA
Gene id: ENSG00000260101
Gene Name: RP11-568N6.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-200c-3p
Sequence: uaauacugccggguaaugaugga
MirBase ID: MIMAT0000617
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
24-49
0.050
0
6mer
377-400
0.004
1
6mer
306-330
0.004
0
RP3-500L14.2
hsa-miR-200c-3p
0.946
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000607518
Biotype: lincRNA
Gene id: ENSG00000272209
Gene Name: RP3-500L14.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-200c-3p
Sequence: uaauacugccggguaaugaugga
MirBase ID: MIMAT0000617
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1088-1111
0.058
1
RP11-1143G9.5
hsa-miR-200c-3p
0.946
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000613291
Biotype: lincRNA
Gene id: ENSG00000274979
Gene Name: RP11-1143G9.5
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-200c-3p
Sequence: uaauacugccggguaaugaugga
MirBase ID: MIMAT0000617
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
5203-5219
0.024
0
8mer
1440-1463
0.013
0
7mer
1112-1133
0.008
1
7mer
1278-1301
0.007
0
6mer
832-848
0.003
1
6mer
1636-1652
0.002
0
RP11-111F5.4
hsa-miR-200c-3p
0.945
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000430302
Biotype: lincRNA
Gene id: ENSG00000204802
Gene Name: RP11-111F5.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-200c-3p
Sequence: uaauacugccggguaaugaugga
MirBase ID: MIMAT0000617
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
23-47
0.057
0
XLOC_013275
hsa-miR-200c-3p
0.943
mTTBlnEmP

Gene Details
Chromosome: chr19
Transcript: TCONS_00027244
Biotype: transcript isomorph
Gene id: XLOC_013275
Gene Name: XLOC_013275
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-200c-3p
Sequence: uaauacugccggguaaugaugga
MirBase ID: MIMAT0000617
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
439-458
0.057
0
CTD-2213F21.2
hsa-miR-200c-3p
0.943
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000502430
Biotype: antisense
Gene id: ENSG00000250365
Gene Name: CTD-2213F21.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-200c-3p
Sequence: uaauacugccggguaaugaugga
MirBase ID: MIMAT0000617
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1118-1138
0.056
1
RP11-4L24.3
hsa-miR-200c-3p
0.942
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000619442
Biotype: lincRNA
Gene id: ENSG00000275450
Gene Name: RP11-4L24.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-200c-3p
Sequence: uaauacugccggguaaugaugga
MirBase ID: MIMAT0000617
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
94-113
0.037
0
7mer
2039-2044
0.008
0
7mer
2385-2410
0.008
0
7mer
2073-2087
0.003
0
CTD-2201E18.3
hsa-miR-200c-3p
0.942
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000503152
Biotype: sense_overlapping
Gene id: ENSG00000177738
Gene Name: CTD-2201E18.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
HeLa Cervix Cancer/Malignant
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-200c-3p
Sequence: uaauacugccggguaaugaugga
MirBase ID: MIMAT0000617
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
424-444
0.056
1
RP11-554A11.7
hsa-miR-200c-3p
0.941
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000567925
Biotype: lincRNA
Gene id: ENSG00000260895
Gene Name: RP11-554A11.7
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-200c-3p
Sequence: uaauacugccggguaaugaugga
MirBase ID: MIMAT0000617
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
570-593
0.039
0
7mer
573-599
0.016
1
RP11-115H18.1
hsa-miR-200c-3p
0.939
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000609293
Biotype: lincRNA
Gene id: ENSG00000273125
Gene Name: RP11-115H18.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-200c-3p
Sequence: uaauacugccggguaaugaugga
MirBase ID: MIMAT0000617
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
797-818
0.038
5
7mer
1085-1104
0.017
1
RP11-262H14.3
hsa-miR-200c-3p
0.938
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000445604
Biotype: lincRNA
Gene id: ENSG00000234665
Gene Name: RP11-262H14.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary


miRNA Details
Name: hsa-miR-200c-3p
Sequence: uaauacugccggguaaugaugga
MirBase ID: MIMAT0000617
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
481-505
0.039
0
7mer
710-732
0.016
0
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