LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-200c-3p


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Gene
miRNA
Score
DIANA Links
RP11-411K7.1
hsa-miR-200c-3p
0.976
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000431554
Biotype: lincRNA
Gene id: ENSG00000236740
Gene Name: RP11-411K7.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-200c-3p
Sequence: uaauacugccggguaaugaugga
MirBase ID: MIMAT0000617
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2811-2830
0.063
1
7mer
2513-2526
0.008
1
XLOC_012614
hsa-miR-200c-3p
0.975
mTTBlnEmP

Gene Details
Chromosome: chr18
Transcript: TCONS_00026245
Biotype: transcript isomorph
Gene id: XLOC_012614
Gene Name: XLOC_012614
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-200c-3p
Sequence: uaauacugccggguaaugaugga
MirBase ID: MIMAT0000617
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
581-602
0.064
2
6mer
1113-1128
0.004
0
6mer
64-90
0.002
0
KCNQ1OT1
hsa-miR-200c-3p
0.975
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000597346
Biotype: antisense
Gene id: ENSG00000269821
Gene Name: KCNQ1OT1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
HepG2 Liver Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-200c-3p
Sequence: uaauacugccggguaaugaugga
MirBase ID: MIMAT0000617
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1153-1173
0.008
1
9mer
42457-42484
0.007
1
7mer
88744-88752
0.007
2
8mer
7538-7557
0.006
1
7mer
32263-32283
0.005
0
8mer
34915-34937
0.005
0
7mer
4366-4384
0.005
0
8mer
75279-75298
0.004
0
7mer
52959-52984
0.003
1
8mer
31201-31220
0.003
0
7mer
36985-37006
0.002
0
6mer
5411-5427
0.002
1
6mer
23412-23425
0.002
0
6mer
63903-63913
0.002
1
6mer
89416-89440
0.002
Not Conserved
6mer
19725-19748
0.002
0
6mer
50187-50198
0.002
1
6mer
11075-11101
0.001
0
6mer
35492-35517
0.001
0
XLOC_001612
hsa-miR-200c-3p
0.974
mTTBlnEmP

Gene Details
Chromosome: chr2
Transcript: TCONS_00002651
Biotype: transcript isomorph
Gene id: XLOC_001612
Gene Name: XLOC_001612
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-200c-3p
Sequence: uaauacugccggguaaugaugga
MirBase ID: MIMAT0000617
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
437-461
0.058
0
6mer
537-555
0.013
0
RP11-839D17.3
hsa-miR-200c-3p
0.974
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000526487
Biotype: antisense
Gene id: ENSG00000255129
Gene Name: RP11-839D17.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-200c-3p
Sequence: uaauacugccggguaaugaugga
MirBase ID: MIMAT0000617
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
471-492
0.066
1
6mer
390-404
0.004
2
XLOC_008046
hsa-miR-200c-3p
0.974
mTTBlnEmP

Gene Details
Chromosome: chrX
Transcript: TCONS_00016921
Biotype: transcript isomorph
Gene id: XLOC_008046
Gene Name: XLOC_008046
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Colon Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-200c-3p
Sequence: uaauacugccggguaaugaugga
MirBase ID: MIMAT0000617
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
697-719
0.044
8
7mer
3222-3245
0.010
9
6mer
3740-3764
0.004
4
6mer
4174-4201
0.004
4
6mer
4173-4194
0.004
0
6mer
4185-4208
0.004
3
LINC00890
hsa-miR-200c-3p
0.974
mTTBlnEmP

Gene Details
Chromosome: X
Transcript: ENST00000569275
Biotype: lincRNA
Gene id: ENSG00000260802
Gene Name: LINC00890
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-200c-3p
Sequence: uaauacugccggguaaugaugga
MirBase ID: MIMAT0000617
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
697-719
0.044
8
7mer
3222-3245
0.010
9
6mer
3740-3764
0.004
4
6mer
4174-4201
0.004
4
6mer
4173-4194
0.004
0
6mer
4185-4208
0.004
3
RP11-839D17.3
hsa-miR-200c-3p
0.973
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000529416
Biotype: antisense
Gene id: ENSG00000255129
Gene Name: RP11-839D17.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-200c-3p
Sequence: uaauacugccggguaaugaugga
MirBase ID: MIMAT0000617
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
587-612
0.065
1
6mer
506-520
0.004
2
THRB-AS1
hsa-miR-200c-3p
0.970
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000594183
Biotype: lincRNA
Gene id: ENSG00000228791
Gene Name: THRB-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-200c-3p
Sequence: uaauacugccggguaaugaugga
MirBase ID: MIMAT0000617
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
562-586
0.067
1
RP13-39P12.3
hsa-miR-200c-3p
0.970
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000601701
Biotype: antisense
Gene id: ENSG00000228748
Gene Name: RP13-39P12.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-200c-3p
Sequence: uaauacugccggguaaugaugga
MirBase ID: MIMAT0000617
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
541-556
0.067
6
SNHG14
hsa-miR-200c-3p
0.968
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000551361
Biotype: antisense
Gene id: ENSG00000224078
Gene Name: SNHG14
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-200c-3p
Sequence: uaauacugccggguaaugaugga
MirBase ID: MIMAT0000617
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
520-527
0.067
1
RP11-111F5.4
hsa-miR-200c-3p
0.968
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000412631
Biotype: lincRNA
Gene id: ENSG00000204802
Gene Name: RP11-111F5.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-200c-3p
Sequence: uaauacugccggguaaugaugga
MirBase ID: MIMAT0000617
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
27-51
0.067
0
XLOC_006460
hsa-miR-200c-3p
0.968
mTTBlnEmP

Gene Details
Chromosome: chr7
Transcript: TCONS_00013820
Biotype: transcript isomorph
Gene id: XLOC_006460
Gene Name: XLOC_006460
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-200c-3p
Sequence: uaauacugccggguaaugaugga
MirBase ID: MIMAT0000617
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1027-1049
0.038
0
6mer
496-507
0.015
1
6mer
64-87
0.013
1
XIST
hsa-miR-200c-3p
0.965
mTTBlnEmP

Gene Details
Chromosome: X
Transcript: ENST00000429829
Biotype: lincRNA
Gene id: ENSG00000229807
Gene Name: XIST
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
- Brain Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
Fibroblasts Lung Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
- Lymph Node Normal/Primary
HMEpC Mammary Gland Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-200c-3p
Sequence: uaauacugccggguaaugaugga
MirBase ID: MIMAT0000617
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
6792-6815
0.018
1
8mer
5853-5878
0.013
1
7mer
836-852
0.012
1
6mer
19026-19049
0.005
1
8mer
4574-4580
0.004
1
6mer
16508-16531
0.002
1
6mer
12372-12398
0.002
1
6mer
6733-6757
0.002
4
6mer
4902-4918
0.002
1
6mer
16916-16933
0.002
Not Conserved
6mer
2113-2129
0.001
Not Conserved
6mer
9563-9579
0.001
0
6mer
12660-12686
0.001
1
6mer
4429-4455
0.001
0
PRKG1-AS1
hsa-miR-200c-3p
0.965
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000420193
Biotype: antisense
Gene id: ENSG00000236671
Gene Name: PRKG1-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
Fibroblasts Foreskin Normal/Primary
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-200c-3p
Sequence: uaauacugccggguaaugaugga
MirBase ID: MIMAT0000617
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
694-708
0.065
4
CTD-2031P19.5
hsa-miR-200c-3p
0.964
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000576302
Biotype: antisense
Gene id: ENSG00000262211
Gene Name: CTD-2031P19.5
UCSC graphic:
Expression:
  Cell Line Tissue Category
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-200c-3p
Sequence: uaauacugccggguaaugaugga
MirBase ID: MIMAT0000617
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
729-751
0.065
2
XLOC_001787
hsa-miR-200c-3p
0.963
mTTBlnEmP

Gene Details
Chromosome: chr2
Transcript: TCONS_00003973
Biotype: transcript isomorph
Gene id: XLOC_001787
Gene Name: XLOC_001787
UCSC graphic: -
Expression:
  Cell Line Tissue Category
Fibroblasts Lung Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-200c-3p
Sequence: uaauacugccggguaaugaugga
MirBase ID: MIMAT0000617
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
16-41
0.064
1
XLOC_014002
hsa-miR-200c-3p
0.963
mTTBlnEmP

Gene Details
Chromosome: chr21
Transcript: TCONS_00029256
Biotype: transcript isomorph
Gene id: XLOC_014002
Gene Name: XLOC_014002
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Lung Normal/Primary
- Lymph Node Normal/Primary


miRNA Details
Name: hsa-miR-200c-3p
Sequence: uaauacugccggguaaugaugga
MirBase ID: MIMAT0000617
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
132-148
0.064
2
MIR6818
hsa-miR-200c-3p
0.961
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000624945
Biotype: antisense
Gene id: ENSG00000279159
Gene Name: MIR6818
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-200c-3p
Sequence: uaauacugccggguaaugaugga
MirBase ID: MIMAT0000617
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
28030-28053
0.014
2
6mer
48851-48869
0.011
11
7mer
39879-39903
0.007
1
7mer
10092-10117
0.005
2
7mer
10724-10740
0.004
1
7mer
38333-38355
0.003
0
7mer
32781-32799
0.002
0
6mer
18285-18300
0.002
6
6mer
13933-13955
0.002
1
6mer
22750-22772
0.002
1
6mer
3649-3672
0.002
1
6mer
17624-17650
0.002
1
6mer
9853-9867
0.001
0
6mer
31352-31366
0.001
2
6mer
6763-6783
0.001
0
6mer
10012-10021
0.001
4
6mer
30758-30785
0.001
1
6mer
39863-39889
0.001
0
6mer
10657-10673
0.001
0
RP11-705O24.3
hsa-miR-200c-3p
0.961
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000518489
Biotype: lincRNA
Gene id: ENSG00000253834
Gene Name: RP11-705O24.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-200c-3p
Sequence: uaauacugccggguaaugaugga
MirBase ID: MIMAT0000617
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
440-461
0.063
1
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