LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-200b-3p


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Gene
miRNA
Score
DIANA Links
XLOC_002300
hsa-miR-200b-3p
0.857
mTTBlnEmP

Gene Details
Chromosome: chr2
Transcript: TCONS_00004430
Biotype: transcript isomorph
Gene id: XLOC_002300
Gene Name: XLOC_002300
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-200b-3p
Sequence: uaauacugccugguaaugauga
MirBase ID: MIMAT0000318
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
25-37
0.040
1
LINC00347
hsa-miR-200b-3p
0.856
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000594461
Biotype: lincRNA
Gene id: ENSG00000236678
Gene Name: LINC00347
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Lymph Node Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-200b-3p
Sequence: uaauacugccugguaaugauga
MirBase ID: MIMAT0000318
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
60-72
0.017
0
7mer
1418-1440
0.011
8
6mer
69-89
0.005
1
6mer
82-101
0.004
1
6mer
1237-1259
0.003
6
LINC01189
hsa-miR-200b-3p
0.854
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000428440
Biotype: lincRNA
Gene id: ENSG00000232827
Gene Name: LINC01189
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-200b-3p
Sequence: uaauacugccugguaaugauga
MirBase ID: MIMAT0000318
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
3196-3212
0.022
1
7mer
1343-1357
0.007
0
6mer
337-361
0.006
0
6mer
288-307
0.004
Not Conserved
RP11-111F5.8
hsa-miR-200b-3p
0.852
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000428709
Biotype: lincRNA
Gene id: ENSG00000233651
Gene Name: RP11-111F5.8
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-200b-3p
Sequence: uaauacugccugguaaugauga
MirBase ID: MIMAT0000318
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
110-126
0.022
1
7mer
1969-1983
0.007
0
6mer
2965-2989
0.006
0
6mer
3019-3038
0.004
Not Conserved
KB-1592A4.14
hsa-miR-200b-3p
0.851
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000417463
Biotype: lincRNA
Gene id: ENSG00000234503
Gene Name: KB-1592A4.14
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-200b-3p
Sequence: uaauacugccugguaaugauga
MirBase ID: MIMAT0000318
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
429-454
0.039
1
RP11-45P15.4
hsa-miR-200b-3p
0.849
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000563989
Biotype: antisense
Gene id: ENSG00000259775
Gene Name: RP11-45P15.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-200b-3p
Sequence: uaauacugccugguaaugauga
MirBase ID: MIMAT0000318
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
600-616
0.039
3
RP11-730G20.1
hsa-miR-200b-3p
0.848
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000522127
Biotype: antisense
Gene id: ENSG00000254080
Gene Name: RP11-730G20.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-200b-3p
Sequence: uaauacugccugguaaugauga
MirBase ID: MIMAT0000318
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
59-78
0.024
1
7mer
152-164
0.015
1
XLOC_000507
hsa-miR-200b-3p
0.848
mTTBlnEmP

Gene Details
Chromosome: chr1
Transcript: TCONS_00000360
Biotype: transcript isomorph
Gene id: XLOC_000507
Gene Name: XLOC_000507
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-200b-3p
Sequence: uaauacugccugguaaugauga
MirBase ID: MIMAT0000318
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
811-831
0.030
0
7mer
814-838
0.009
1
XLOC_010069
hsa-miR-200b-3p
0.847
mTTBlnEmP

Gene Details
Chromosome: chr12
Transcript: TCONS_00020779
Biotype: transcript isomorph
Gene id: XLOC_010069
Gene Name: XLOC_010069
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Lung Normal/Primary
- Ovary Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-200b-3p
Sequence: uaauacugccugguaaugauga
MirBase ID: MIMAT0000318
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
53-59
0.034
0
6mer
403-407
0.005
1
AP001604.3
hsa-miR-200b-3p
0.847
mTTBlnEmP

Gene Details
Chromosome: 21
Transcript: ENST00000420186
Biotype: lincRNA
Gene id: ENSG00000231236
Gene Name: AP001604.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-200b-3p
Sequence: uaauacugccugguaaugauga
MirBase ID: MIMAT0000318
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
373-395
0.016
3
9mer
2513-2531
0.015
0
7mer
788-804
0.008
3
RP11-394I13.2
hsa-miR-200b-3p
0.846
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000605739
Biotype: lincRNA
Gene id: ENSG00000271151
Gene Name: RP11-394I13.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant


miRNA Details
Name: hsa-miR-200b-3p
Sequence: uaauacugccugguaaugauga
MirBase ID: MIMAT0000318
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
650-662
0.028
0
7mer
770-788
0.011
0
AC008937.3
hsa-miR-200b-3p
0.845
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000453721
Biotype: antisense
Gene id: ENSG00000225230
Gene Name: AC008937.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-200b-3p
Sequence: uaauacugccugguaaugauga
MirBase ID: MIMAT0000318
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
86-106
0.038
2
CTD-3105H18.13
hsa-miR-200b-3p
0.845
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000563695
Biotype: lincRNA
Gene id: ENSG00000261280
Gene Name: CTD-3105H18.13
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-200b-3p
Sequence: uaauacugccugguaaugauga
MirBase ID: MIMAT0000318
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
177-191
0.018
1
6mer
1226-1237
0.011
1
6mer
1941-1962
0.010
0
DLEU2
hsa-miR-200b-3p
0.845
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000235290
Biotype: antisense
Gene id: ENSG00000231607
Gene Name: DLEU2
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-200b-3p
Sequence: uaauacugccugguaaugauga
MirBase ID: MIMAT0000318
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1416-1437
0.029
8
6mer
1207-1217
0.005
3
6mer
668-687
0.004
1
RP11-203F8.1
hsa-miR-200b-3p
0.845
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000529884
Biotype: antisense
Gene id: ENSG00000255506
Gene Name: RP11-203F8.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-200b-3p
Sequence: uaauacugccugguaaugauga
MirBase ID: MIMAT0000318
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
53-69
0.038
1
C5orf64
hsa-miR-200b-3p
0.845
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000313303
Biotype: processed_transcript
Gene id: ENSG00000178722
Gene Name: C5orf64
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-200b-3p
Sequence: uaauacugccugguaaugauga
MirBase ID: MIMAT0000318
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
215-234
0.022
5
8mer
1980-1997
0.010
1
6mer
2645-2670
0.004
1
6mer
1694-1708
0.003
3
LINC00994
hsa-miR-200b-3p
0.843
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000485805
Biotype: lincRNA
Gene id: ENSG00000189196
Gene Name: LINC00994
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Breast Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-200b-3p
Sequence: uaauacugccugguaaugauga
MirBase ID: MIMAT0000318
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2087-2103
0.020
1
7mer
1201-1219
0.006
3
6mer
299-315
0.005
1
6mer
1570-1587
0.004
1
6mer
747-768
0.003
1
CTB-107G13.1
hsa-miR-200b-3p
0.843
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000422488
Biotype: antisense
Gene id: ENSG00000234715
Gene Name: CTB-107G13.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-200b-3p
Sequence: uaauacugccugguaaugauga
MirBase ID: MIMAT0000318
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2390-2411
0.031
0
9mer
1937-1954
0.007
Not Conserved
XLOC_006415
hsa-miR-200b-3p
0.843
mTTBlnEmP

Gene Details
Chromosome: chr7
Transcript: TCONS_00013782
Biotype: transcript isomorph
Gene id: XLOC_006415
Gene Name: XLOC_006415
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
HeLa Cervix Cancer/Malignant
- Lung Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-200b-3p
Sequence: uaauacugccugguaaugauga
MirBase ID: MIMAT0000318
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
882-907
0.015
1
7mer
17-39
0.013
1
6mer
240-263
0.007
1
6mer
424-442
0.003
Not Conserved
XLOC_009231
hsa-miR-200b-3p
0.842
mTTBlnEmP

Gene Details
Chromosome: chr11
Transcript: TCONS_00019958
Biotype: transcript isomorph
Gene id: XLOC_009231
Gene Name: XLOC_009231
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-200b-3p
Sequence: uaauacugccugguaaugauga
MirBase ID: MIMAT0000318
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
851-872
0.024
1
7mer
74-96
0.014
0
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