LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-200b-3p


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Gene
miRNA
Score
DIANA Links
MUC19
hsa-miR-200b-3p
0.869
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000474954
Biotype: retained_intron
Gene id: ENSG00000205592
Gene Name: MUC19
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
- Testes Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-200b-3p
Sequence: uaauacugccugguaaugauga
MirBase ID: MIMAT0000318
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
100-115
0.015
1
7mer
229-251
0.009
0
7mer
541-554
0.008
1
7mer
2312-2327
0.004
1
7mer
2754-2767
0.004
0
6mer
1065-1087
0.002
0
RP11-380B4.3
hsa-miR-200b-3p
0.868
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000617901
Biotype: lincRNA
Gene id: ENSG00000277151
Gene Name: RP11-380B4.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-200b-3p
Sequence: uaauacugccugguaaugauga
MirBase ID: MIMAT0000318
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
29-55
0.023
2
9mer
2827-2844
0.015
1
6mer
2127-2151
0.002
0
6mer
2526-2547
0.002
1
RP11-174G6.5
hsa-miR-200b-3p
0.868
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000562691
Biotype: sense_overlapping
Gene id: ENSG00000261324
Gene Name: RP11-174G6.5
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-200b-3p
Sequence: uaauacugccugguaaugauga
MirBase ID: MIMAT0000318
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1185-1191
0.020
1
8mer
3221-3237
0.008
1
6mer
5256-5279
0.005
1
6mer
211-226
0.004
0
6mer
4010-4036
0.002
1
6mer
3116-3142
0.002
1
XLOC_013995
hsa-miR-200b-3p
0.868
mTTBlnEmP

Gene Details
Chromosome: chr21
Transcript: TCONS_00029073
Biotype: transcript isomorph
Gene id: XLOC_013995
Gene Name: XLOC_013995
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
- Brain Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Liver Normal/Primary
HepG2 Liver Cancer/Malignant
- Lung Normal/Primary
A549 Lung Cancer/Malignant
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-200b-3p
Sequence: uaauacugccugguaaugauga
MirBase ID: MIMAT0000318
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
432-447
0.020
0
8mer
1692-1718
0.013
0
7mer
2016-2027
0.004
Not Conserved
6mer
2934-2942
0.002
0
6mer
2296-2320
0.002
0
RP11-7F17.8
hsa-miR-200b-3p
0.868
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000619017
Biotype: antisense
Gene id: ENSG00000273729
Gene Name: RP11-7F17.8
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-200b-3p
Sequence: uaauacugccugguaaugauga
MirBase ID: MIMAT0000318
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2931-2956
0.024
0
6mer
3351-3365
0.007
1
6mer
2635-2649
0.004
1
7mer
1884-1902
0.004
1
6mer
1030-1055
0.003
4
DYX1C1-CCPG1
hsa-miR-200b-3p
0.867
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000565113
Biotype: processed_transcript
Gene id: ENSG00000261771
Gene Name: DYX1C1-CCPG1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-200b-3p
Sequence: uaauacugccugguaaugauga
MirBase ID: MIMAT0000318
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
3845-3866
0.018
3
7mer
2470-2495
0.007
6
7mer
3873-3890
0.005
2
6mer
359-385
0.005
4
6mer
239-254
0.003
1
6mer
1233-1243
0.002
2
6mer
3820-3841
0.002
4
RASAL2-AS1
hsa-miR-200b-3p
0.866
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000419458
Biotype: lincRNA
Gene id: ENSG00000224687
Gene Name: RASAL2-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-200b-3p
Sequence: uaauacugccugguaaugauga
MirBase ID: MIMAT0000318
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1673-1699
0.031
3
6mer
118-144
0.006
1
6mer
1162-1183
0.005
2
XLOC_014019
hsa-miR-200b-3p
0.866
mTTBlnEmP

Gene Details
Chromosome: chr21
Transcript: TCONS_00029091
Biotype: transcript isomorph
Gene id: XLOC_014019
Gene Name: XLOC_014019
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-200b-3p
Sequence: uaauacugccugguaaugauga
MirBase ID: MIMAT0000318
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
297-317
0.021
1
6mer
281-302
0.007
6
6mer
3899-3913
0.004
Not Conserved
6mer
3815-3836
0.004
1
7mer
1658-1679
0.004
1
6mer
531-552
0.002
0
RP11-99H20.1
hsa-miR-200b-3p
0.865
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000520155
Biotype: lincRNA
Gene id: ENSG00000254123
Gene Name: RP11-99H20.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-200b-3p
Sequence: uaauacugccugguaaugauga
MirBase ID: MIMAT0000318
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
63-86
0.032
1
7mer
441-464
0.009
1
AC005498.4
hsa-miR-200b-3p
0.865
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000592125
Biotype: lincRNA
Gene id: ENSG00000267224
Gene Name: AC005498.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-200b-3p
Sequence: uaauacugccugguaaugauga
MirBase ID: MIMAT0000318
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
273-289
0.041
1
LINC00506
hsa-miR-200b-3p
0.864
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: NR_047469.1
Biotype: lincRNA
Gene id: NR_047469.1 (gene)
Gene Name: LINC00506
UCSC graphic: -
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-200b-3p
Sequence: uaauacugccugguaaugauga
MirBase ID: MIMAT0000318
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
4124-4146
0.022
2
8mer
3682-3701
0.016
0
6mer
621-647
0.004
0
CTD-2530H12.1
hsa-miR-200b-3p
0.862
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000499390
Biotype: antisense
Gene id: ENSG00000247867
Gene Name: CTD-2530H12.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-200b-3p
Sequence: uaauacugccugguaaugauga
MirBase ID: MIMAT0000318
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
21-39
0.041
2
XLOC_009505
hsa-miR-200b-3p
0.862
mTTBlnEmP

Gene Details
Chromosome: chr11
Transcript: TCONS_00019124
Biotype: transcript isomorph
Gene id: XLOC_009505
Gene Name: XLOC_009505
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-200b-3p
Sequence: uaauacugccugguaaugauga
MirBase ID: MIMAT0000318
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
19-37
0.041
2
XLOC_013866
hsa-miR-200b-3p
0.861
mTTBlnEmP

Gene Details
Chromosome: chr21
Transcript: TCONS_00028969
Biotype: transcript isomorph
Gene id: XLOC_013866
Gene Name: XLOC_013866
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
- Heart Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Kidney Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-200b-3p
Sequence: uaauacugccugguaaugauga
MirBase ID: MIMAT0000318
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
3171-3191
0.014
1
7mer
386-403
0.008
0
7mer
3405-3427
0.006
2
6mer
348-365
0.006
2
6mer
2479-2498
0.002
1
6mer
1329-1342
0.002
1
6mer
2015-2035
0.001
0
RP11-803D5.4
hsa-miR-200b-3p
0.860
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000603052
Biotype: lincRNA
Gene id: ENSG00000270190
Gene Name: RP11-803D5.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-200b-3p
Sequence: uaauacugccugguaaugauga
MirBase ID: MIMAT0000318
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
517-538
0.024
2
7mer
508-528
0.017
0
PCAT19
hsa-miR-200b-3p
0.860
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000599801
Biotype: lincRNA
Gene id: ENSG00000267107
Gene Name: PCAT19
UCSC graphic:
Expression:
  Cell Line Tissue Category
HUVEC Blood Vessel Normal/Primary


miRNA Details
Name: hsa-miR-200b-3p
Sequence: uaauacugccugguaaugauga
MirBase ID: MIMAT0000318
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
162-181
0.040
1
TSIX
hsa-miR-200b-3p
0.860
mTTBlnEmP

Gene Details
Chromosome: X
Transcript: ENST00000604411
Biotype: lincRNA
Gene id: ENSG00000270641
Gene Name: TSIX
UCSC graphic:
Expression:
  Cell Line Tissue Category
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-200b-3p
Sequence: uaauacugccugguaaugauga
MirBase ID: MIMAT0000318
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
20697-20717
0.006
0
7mer
18743-18769
0.006
0
7mer
33685-33699
0.005
1
7mer
30189-30205
0.003
1
6mer
36336-36353
0.003
0
7mer
2796-2810
0.003
1
6mer
33467-33492
0.002
1
6mer
24143-24166
0.002
0
6mer
2780-2803
0.002
0
6mer
22359-22380
0.002
1
6mer
19425-19442
0.002
1
6mer
33727-33753
0.001
5
6mer
13218-13235
0.001
Not Conserved
6mer
10814-10837
0.001
0
6mer
10336-10356
0.001
0
RP11-142O6.1
hsa-miR-200b-3p
0.859
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000584382
Biotype: sense_intronic
Gene id: ENSG00000266371
Gene Name: RP11-142O6.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-200b-3p
Sequence: uaauacugccugguaaugauga
MirBase ID: MIMAT0000318
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
49-61
0.040
1
RP11-664H17.1
hsa-miR-200b-3p
0.859
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000536666
Biotype: lincRNA
Gene id: ENSG00000256287
Gene Name: RP11-664H17.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-200b-3p
Sequence: uaauacugccugguaaugauga
MirBase ID: MIMAT0000318
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
38-55
0.040
0
LL22NC03-22D1.1
hsa-miR-200b-3p
0.857
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000624601
Biotype: lincRNA
Gene id: ENSG00000279003
Gene Name: LL22NC03-22D1.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-200b-3p
Sequence: uaauacugccugguaaugauga
MirBase ID: MIMAT0000318
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
21433-21450
0.018
1
7mer
16753-16773
0.003
0
7mer
3335-3355
0.003
Not Conserved
6mer
28712-28732
0.003
0
7mer
10250-10275
0.003
0
7mer
21529-21552
0.002
1
6mer
8360-8371
0.002
2
6mer
12256-12270
0.001
1
6mer
9096-9113
0.001
Not Conserved
6mer
11854-11874
0.001
0
6mer
11947-11964
0.001
0
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