LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-200b-3p


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Gene
miRNA
Score
DIANA Links
CTD-2031P19.5
hsa-miR-200b-3p
0.883
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000576302
Biotype: antisense
Gene id: ENSG00000262211
Gene Name: CTD-2031P19.5
UCSC graphic:
Expression:
  Cell Line Tissue Category
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-200b-3p
Sequence: uaauacugccugguaaugauga
MirBase ID: MIMAT0000318
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
741-751
0.044
2
DNM3OS
hsa-miR-200b-3p
0.882
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: NR_038397.2
Biotype: antisense
Gene id: NR_038397.2 (gene)
Gene Name: DNM3OS
UCSC graphic: -
Expression:
  Cell Line Tissue Category
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-200b-3p
Sequence: uaauacugccugguaaugauga
MirBase ID: MIMAT0000318
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2400-2419
0.017
5
7mer
852-877
0.007
3
7mer
5249-5273
0.007
5
7mer
1769-1794
0.004
1
6mer
3537-3556
0.002
3
6mer
4070-4087
0.002
4
6mer
6186-6195
0.002
1
6mer
1422-1437
0.002
0
XXbac-B33L19.6
hsa-miR-200b-3p
0.882
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000614584
Biotype: lincRNA
Gene id: ENSG00000277017
Gene Name: XXbac-B33L19.6
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-200b-3p
Sequence: uaauacugccugguaaugauga
MirBase ID: MIMAT0000318
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
30-55
0.044
1
XLOC_008207
hsa-miR-200b-3p
0.881
mTTBlnEmP

Gene Details
Chromosome: chrX
Transcript: TCONS_00017361
Biotype: transcript isomorph
Gene id: XLOC_008207
Gene Name: XLOC_008207
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
- Colon Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
Fibroblasts Lung Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-200b-3p
Sequence: uaauacugccugguaaugauga
MirBase ID: MIMAT0000318
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
381-404
0.018
9
6mer
4627-4650
0.007
0
6mer
4360-4376
0.006
2
7mer
2047-2064
0.003
1
6mer
483-505
0.003
0
6mer
3583-3605
0.003
Not Conserved
6mer
1778-1790
0.002
1
7mer
1972-1996
0.002
1
RP11-226P1.2
hsa-miR-200b-3p
0.880
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000556144
Biotype: lincRNA
Gene id: ENSG00000258718
Gene Name: RP11-226P1.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-200b-3p
Sequence: uaauacugccugguaaugauga
MirBase ID: MIMAT0000318
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
81-104
0.043
0
RP11-347J14.7
hsa-miR-200b-3p
0.879
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000423499
Biotype: lincRNA
Gene id: ENSG00000231140
Gene Name: RP11-347J14.7
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Lung Normal/Primary
- Ovary Normal/Primary


miRNA Details
Name: hsa-miR-200b-3p
Sequence: uaauacugccugguaaugauga
MirBase ID: MIMAT0000318
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
394-413
0.019
0
6mer
140-157
0.016
1
6mer
1000-1009
0.008
0
SPAG5-AS1
hsa-miR-200b-3p
0.878
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000556050
Biotype: antisense
Gene id: ENSG00000227543
Gene Name: SPAG5-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
HeLa Cervix Cancer/Malignant


miRNA Details
Name: hsa-miR-200b-3p
Sequence: uaauacugccugguaaugauga
MirBase ID: MIMAT0000318
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
707-725
0.043
1
BOLA3-AS1
hsa-miR-200b-3p
0.878
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000529783
Biotype: antisense
Gene id: ENSG00000225439
Gene Name: BOLA3-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-200b-3p
Sequence: uaauacugccugguaaugauga
MirBase ID: MIMAT0000318
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
605-621
0.043
1
RP11-522N14.2
hsa-miR-200b-3p
0.877
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000539391
Biotype: lincRNA
Gene id: ENSG00000256596
Gene Name: RP11-522N14.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-200b-3p
Sequence: uaauacugccugguaaugauga
MirBase ID: MIMAT0000318
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2206-2231
0.043
1
RP11-250B2.6
hsa-miR-200b-3p
0.877
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000606629
Biotype: lincRNA
Gene id: ENSG00000272129
Gene Name: RP11-250B2.6
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-200b-3p
Sequence: uaauacugccugguaaugauga
MirBase ID: MIMAT0000318
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1341-1361
0.021
0
7mer
1111-1130
0.008
1
6mer
1294-1316
0.005
0
6mer
211-226
0.004
Not Conserved
6mer
1086-1112
0.004
0
XLOC_009783
hsa-miR-200b-3p
0.877
mTTBlnEmP

Gene Details
Chromosome: chr12
Transcript: TCONS_00020451
Biotype: transcript isomorph
Gene id: XLOC_009783
Gene Name: XLOC_009783
UCSC graphic: -
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
- Brain Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-200b-3p
Sequence: uaauacugccugguaaugauga
MirBase ID: MIMAT0000318
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
457-474
0.043
0
CTD-2521M24.9
hsa-miR-200b-3p
0.877
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000600369
Biotype: lincRNA
Gene id: ENSG00000269640
Gene Name: CTD-2521M24.9
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-200b-3p
Sequence: uaauacugccugguaaugauga
MirBase ID: MIMAT0000318
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
604-630
0.022
1
7mer
935-948
0.021
1
RP11-674P19.2
hsa-miR-200b-3p
0.877
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000579651
Biotype: lincRNA
Gene id: ENSG00000264705
Gene Name: RP11-674P19.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-200b-3p
Sequence: uaauacugccugguaaugauga
MirBase ID: MIMAT0000318
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1413-1425
0.029
1
7mer
131-152
0.011
0
6mer
971-990
0.002
1
RP11-354M20.3
hsa-miR-200b-3p
0.873
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000595446
Biotype: antisense
Gene id: ENSG00000231104
Gene Name: RP11-354M20.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-200b-3p
Sequence: uaauacugccugguaaugauga
MirBase ID: MIMAT0000318
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
209-231
0.042
2
RP13-20L14.6
hsa-miR-200b-3p
0.873
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000578344
Biotype: antisense
Gene id: ENSG00000265458
Gene Name: RP13-20L14.6
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-200b-3p
Sequence: uaauacugccugguaaugauga
MirBase ID: MIMAT0000318
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
162-181
0.042
1
AC009299.2
hsa-miR-200b-3p
0.872
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000421122
Biotype: antisense
Gene id: ENSG00000235724
Gene Name: AC009299.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-200b-3p
Sequence: uaauacugccugguaaugauga
MirBase ID: MIMAT0000318
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
50-62
0.019
1
8mer
1003-1014
0.013
1
6mer
528-550
0.010
10
XLOC_012048
hsa-miR-200b-3p
0.872
mTTBlnEmP

Gene Details
Chromosome: chr16
Transcript: TCONS_00025089
Biotype: transcript isomorph
Gene id: XLOC_012048
Gene Name: XLOC_012048
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-200b-3p
Sequence: uaauacugccugguaaugauga
MirBase ID: MIMAT0000318
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
30-52
0.028
0
7mer
434-448
0.014
1
AF127936.7
hsa-miR-200b-3p
0.869
mTTBlnEmP

Gene Details
Chromosome: 21
Transcript: ENST00000432230
Biotype: lincRNA
Gene id: ENSG00000235609
Gene Name: AF127936.7
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-200b-3p
Sequence: uaauacugccugguaaugauga
MirBase ID: MIMAT0000318
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
114-138
0.022
4
8mer
3576-3597
0.012
1
6mer
701-727
0.003
2
7mer
3466-3482
0.002
0
6mer
3909-3929
0.002
3
FLJ22763
hsa-miR-200b-3p
0.869
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000479039
Biotype: lincRNA
Gene id: ENSG00000241224
Gene Name: FLJ22763
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-200b-3p
Sequence: uaauacugccugguaaugauga
MirBase ID: MIMAT0000318
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
170-184
0.042
4
XLOC_005637
hsa-miR-200b-3p
0.869
mTTBlnEmP

Gene Details
Chromosome: chr6
Transcript: TCONS_00012107
Biotype: transcript isomorph
Gene id: XLOC_005637
Gene Name: XLOC_005637
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-200b-3p
Sequence: uaauacugccugguaaugauga
MirBase ID: MIMAT0000318
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
47-66
0.022
0
7mer
185-202
0.014
0
6mer
57-77
0.006
0
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