LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-19b-3p


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Gene
miRNA
Score
DIANA Links
RP11-402L1.11
hsa-miR-19b-3p
0.897
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000418426
Biotype: lincRNA
Gene id: ENSG00000228426
Gene Name: RP11-402L1.11
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-19b-3p
Sequence: ugugcaaauccaugcaaaacuga
MirBase ID: MIMAT0000074
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
267-292
0.046
0
XLOC_001263
hsa-miR-19b-3p
0.895
mTTBlnEmP

Gene Details
Chromosome: chr1
Transcript: TCONS_00001880
Biotype: transcript isomorph
Gene id: XLOC_001263
Gene Name: XLOC_001263
UCSC graphic: -
Expression:
  Cell Line Tissue Category
HepG2 Liver Cancer/Malignant
- Liver Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-19b-3p
Sequence: ugugcaaauccaugcaaaacuga
MirBase ID: MIMAT0000074
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
30-49
0.046
3
RP11-140I24.1
hsa-miR-19b-3p
0.895
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000562661
Biotype: lincRNA
Gene id: ENSG00000258779
Gene Name: RP11-140I24.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-19b-3p
Sequence: ugugcaaauccaugcaaaacuga
MirBase ID: MIMAT0000074
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
329-349
0.046
5
LINC01184
hsa-miR-19b-3p
0.895
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000501702
Biotype: lincRNA
Gene id: ENSG00000245937
Gene Name: LINC01184
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-19b-3p
Sequence: ugugcaaauccaugcaaaacuga
MirBase ID: MIMAT0000074
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
121-128
0.043
2
6mer
360-381
0.003
1
LINC01184
hsa-miR-19b-3p
0.895
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: NR_015360.1
Biotype: lincRNA
Gene id: NR_015360.1 (gene)
Gene Name: LINC01184
UCSC graphic: -
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HeLa Cervix Cancer/Malignant
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-19b-3p
Sequence: ugugcaaauccaugcaaaacuga
MirBase ID: MIMAT0000074
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
98-105
0.043
2
6mer
337-358
0.003
1
RP5-884M6.1
hsa-miR-19b-3p
0.894
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000602761
Biotype: lincRNA
Gene id: ENSG00000228742
Gene Name: RP5-884M6.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-19b-3p
Sequence: ugugcaaauccaugcaaaacuga
MirBase ID: MIMAT0000074
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2913-2927
0.032
5
7mer
730-753
0.009
1
7mer
340-365
0.004
0
AC012322.1
hsa-miR-19b-3p
0.893
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000561657
Biotype: lincRNA
Gene id: ENSG00000261028
Gene Name: AC012322.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-19b-3p
Sequence: ugugcaaauccaugcaaaacuga
MirBase ID: MIMAT0000074
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
170-193
0.038
4
6mer
151-170
0.007
5
RP11-624L4.2
hsa-miR-19b-3p
0.893
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000558846
Biotype: lincRNA
Gene id: ENSG00000259269
Gene Name: RP11-624L4.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-19b-3p
Sequence: ugugcaaauccaugcaaaacuga
MirBase ID: MIMAT0000074
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
186-204
0.045
8
RP11-114H24.3
hsa-miR-19b-3p
0.891
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000569892
Biotype: lincRNA
Gene id: ENSG00000261403
Gene Name: RP11-114H24.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-19b-3p
Sequence: ugugcaaauccaugcaaaacuga
MirBase ID: MIMAT0000074
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
346-372
0.045
1
RP11-230G5.2
hsa-miR-19b-3p
0.889
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000540652
Biotype: lincRNA
Gene id: ENSG00000250748
Gene Name: RP11-230G5.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-19b-3p
Sequence: ugugcaaauccaugcaaaacuga
MirBase ID: MIMAT0000074
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
107-123
0.045
4
AC073316.1
hsa-miR-19b-3p
0.889
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000437354
Biotype: antisense
Gene id: ENSG00000236708
Gene Name: AC073316.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-19b-3p
Sequence: ugugcaaauccaugcaaaacuga
MirBase ID: MIMAT0000074
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
89-108
0.034
0
7mer
267-284
0.011
2
TEX26-AS1
hsa-miR-19b-3p
0.889
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000429200
Biotype: antisense
Gene id: ENSG00000224743
Gene Name: TEX26-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-19b-3p
Sequence: ugugcaaauccaugcaaaacuga
MirBase ID: MIMAT0000074
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
138-145
0.045
1
RP11-230G5.2
hsa-miR-19b-3p
0.889
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000539653
Biotype: lincRNA
Gene id: ENSG00000250748
Gene Name: RP11-230G5.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-19b-3p
Sequence: ugugcaaauccaugcaaaacuga
MirBase ID: MIMAT0000074
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
95-111
0.045
4
XLOC_008100
hsa-miR-19b-3p
0.889
mTTBlnEmP

Gene Details
Chromosome: chrX
Transcript: TCONS_00017281
Biotype: transcript isomorph
Gene id: XLOC_008100
Gene Name: XLOC_008100
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
- Brain Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Breast Normal/Primary
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
A549 Lung Cancer/Malignant
Fibroblasts Lung Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-19b-3p
Sequence: ugugcaaauccaugcaaaacuga
MirBase ID: MIMAT0000074
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
466-484
0.045
2
RP11-486O12.2
hsa-miR-19b-3p
0.888
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: NR_110049.1
Biotype: lincRNA
Gene id: NR_110049.1 (gene)
Gene Name: RP11-486O12.2
UCSC graphic: -
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-19b-3p
Sequence: ugugcaaauccaugcaaaacuga
MirBase ID: MIMAT0000074
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1353-1379
0.037
3
7mer
1658-1677
0.005
0
6mer
1084-1107
0.002
1
RP11-815M8.1
hsa-miR-19b-3p
0.887
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000412445
Biotype: lincRNA
Gene id: ENSG00000238042
Gene Name: RP11-815M8.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Lung Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-19b-3p
Sequence: ugugcaaauccaugcaaaacuga
MirBase ID: MIMAT0000074
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
27-45
0.044
2
RP11-196G18.23
hsa-miR-19b-3p
0.887
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000577853
Biotype: antisense
Gene id: ENSG00000264207
Gene Name: RP11-196G18.23
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-19b-3p
Sequence: ugugcaaauccaugcaaaacuga
MirBase ID: MIMAT0000074
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
674-692
0.043
0
6mer
681-704
0.002
0
XLOC_007169
hsa-miR-19b-3p
0.886
mTTBlnEmP

Gene Details
Chromosome: chr8
Transcript: TCONS_00015112
Biotype: transcript isomorph
Gene id: XLOC_007169
Gene Name: XLOC_007169
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-19b-3p
Sequence: ugugcaaauccaugcaaaacuga
MirBase ID: MIMAT0000074
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
92-99
0.044
1
XLOC_003142
hsa-miR-19b-3p
0.885
mTTBlnEmP

Gene Details
Chromosome: chr3
Transcript: TCONS_00006518
Biotype: transcript isomorph
Gene id: XLOC_003142
Gene Name: XLOC_003142
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Lung Normal/Primary


miRNA Details
Name: hsa-miR-19b-3p
Sequence: ugugcaaauccaugcaaaacuga
MirBase ID: MIMAT0000074
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
64-84
0.044
7
RP13-192B19.2
hsa-miR-19b-3p
0.885
mTTBlnEmP

Gene Details
Chromosome: X
Transcript: ENST00000569460
Biotype: lincRNA
Gene id: ENSG00000260585
Gene Name: RP13-192B19.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-19b-3p
Sequence: ugugcaaauccaugcaaaacuga
MirBase ID: MIMAT0000074
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
187-203
0.042
1
6mer
1776-1803
0.002
1
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