LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-19b-3p


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Gene
miRNA
Score
DIANA Links
RP11-617F23.1
hsa-miR-19b-3p
0.911
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000558334
Biotype: antisense
Gene id: ENSG00000259291
Gene Name: RP11-617F23.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-19b-3p
Sequence: ugugcaaauccaugcaaaacuga
MirBase ID: MIMAT0000074
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1069-1084
0.049
5
AC139099.5
hsa-miR-19b-3p
0.911
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000574098
Biotype: lincRNA
Gene id: ENSG00000262094
Gene Name: AC139099.5
UCSC graphic:
Expression:
  Cell Line Tissue Category
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-19b-3p
Sequence: ugugcaaauccaugcaaaacuga
MirBase ID: MIMAT0000074
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2071-2094
0.028
1
6mer
222-236
0.007
1
7mer
2063-2076
0.006
0
6mer
2209-2230
0.005
1
6mer
767-787
0.003
0
CTB-175E5.7
hsa-miR-19b-3p
0.908
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000586560
Biotype: antisense
Gene id: ENSG00000267394
Gene Name: CTB-175E5.7
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-19b-3p
Sequence: ugugcaaauccaugcaaaacuga
MirBase ID: MIMAT0000074
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
513-525
0.048
10
PCBP1-AS1
hsa-miR-19b-3p
0.908
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000458698
Biotype: antisense
Gene id: ENSG00000179818
Gene Name: PCBP1-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-19b-3p
Sequence: ugugcaaauccaugcaaaacuga
MirBase ID: MIMAT0000074
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
75-94
0.046
3
6mer
1033-1055
0.002
0
RP11-344E13.3
hsa-miR-19b-3p
0.907
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000582583
Biotype: antisense
Gene id: ENSG00000233098
Gene Name: RP11-344E13.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant


miRNA Details
Name: hsa-miR-19b-3p
Sequence: ugugcaaauccaugcaaaacuga
MirBase ID: MIMAT0000074
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1136-1154
0.029
2
7mer
150-172
0.015
0
6mer
1351-1359
0.003
Not Conserved
RP4-671O14.7
hsa-miR-19b-3p
0.906
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000624215
Biotype: antisense
Gene id: ENSG00000280011
Gene Name: RP4-671O14.7
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-19b-3p
Sequence: ugugcaaauccaugcaaaacuga
MirBase ID: MIMAT0000074
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1916-1926
0.025
5
7mer
1001-1025
0.010
1
6mer
18212-18225
0.004
1
6mer
17906-17910
0.003
1
6mer
15540-15566
0.001
1
6mer
8359-8386
0.001
0
6mer
16136-16159
0.001
1
6mer
7675-7701
0.001
0
6mer
2616-2639
0.001
1
XLOC_003347
hsa-miR-19b-3p
0.906
mTTBlnEmP

Gene Details
Chromosome: chr3
Transcript: TCONS_00006719
Biotype: transcript isomorph
Gene id: XLOC_003347
Gene Name: XLOC_003347
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-19b-3p
Sequence: ugugcaaauccaugcaaaacuga
MirBase ID: MIMAT0000074
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
4-15
0.048
0
RP1-86D1.2
hsa-miR-19b-3p
0.906
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000434560
Biotype: sense_intronic
Gene id: ENSG00000228972
Gene Name: RP1-86D1.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-19b-3p
Sequence: ugugcaaauccaugcaaaacuga
MirBase ID: MIMAT0000074
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
315-331
0.048
1
XLOC_004556
hsa-miR-19b-3p
0.904
mTTBlnEmP

Gene Details
Chromosome: chr5
Transcript: TCONS_00010096
Biotype: transcript isomorph
Gene id: XLOC_004556
Gene Name: XLOC_004556
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Lymph Node Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-19b-3p
Sequence: ugugcaaauccaugcaaaacuga
MirBase ID: MIMAT0000074
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
596-606
0.047
2
KB-1458E12.1
hsa-miR-19b-3p
0.904
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000518704
Biotype: lincRNA
Gene id: ENSG00000254267
Gene Name: KB-1458E12.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-19b-3p
Sequence: ugugcaaauccaugcaaaacuga
MirBase ID: MIMAT0000074
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
405-412
0.047
1
XLOC_001025
hsa-miR-19b-3p
0.903
mTTBlnEmP

Gene Details
Chromosome: chr1
Transcript: TCONS_00001679
Biotype: transcript isomorph
Gene id: XLOC_001025
Gene Name: XLOC_001025
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Kidney Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Liver Normal/Primary
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-19b-3p
Sequence: ugugcaaauccaugcaaaacuga
MirBase ID: MIMAT0000074
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
185-199
0.026
1
7mer
285-308
0.021
4
RP11-45H22.3
hsa-miR-19b-3p
0.903
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000505950
Biotype: lincRNA
Gene id: ENSG00000249016
Gene Name: RP11-45H22.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-19b-3p
Sequence: ugugcaaauccaugcaaaacuga
MirBase ID: MIMAT0000074
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
5-30
0.047
1
LINC01011
hsa-miR-19b-3p
0.902
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: NR_026856.1
Biotype: sense
Gene id: NR_026856.1 (gene)
Gene Name: LINC01011
UCSC graphic: -
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-19b-3p
Sequence: ugugcaaauccaugcaaaacuga
MirBase ID: MIMAT0000074
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
723-741
0.036
2
7mer
853-872
0.011
2
SHANK2-AS3
hsa-miR-19b-3p
0.902
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000307548
Biotype: antisense
Gene id: ENSG00000171671
Gene Name: SHANK2-AS3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-19b-3p
Sequence: ugugcaaauccaugcaaaacuga
MirBase ID: MIMAT0000074
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
789-805
0.042
2
6mer
1058-1081
0.003
0
6mer
1445-1466
0.002
0
RP11-212E8.1
hsa-miR-19b-3p
0.901
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000577556
Biotype: lincRNA
Gene id: ENSG00000264174
Gene Name: RP11-212E8.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-19b-3p
Sequence: ugugcaaauccaugcaaaacuga
MirBase ID: MIMAT0000074
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
525-536
0.047
5
CTA-125H2.1
hsa-miR-19b-3p
0.899
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000436423
Biotype: antisense
Gene id: ENSG00000232464
Gene Name: CTA-125H2.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-19b-3p
Sequence: ugugcaaauccaugcaaaacuga
MirBase ID: MIMAT0000074
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
386-397
0.046
2
RP11-718G2.5
hsa-miR-19b-3p
0.898
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000553791
Biotype: lincRNA
Gene id: ENSG00000259033
Gene Name: RP11-718G2.5
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-19b-3p
Sequence: ugugcaaauccaugcaaaacuga
MirBase ID: MIMAT0000074
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
405-421
0.026
0
8mer
364-376
0.021
0
RP3-323A16.1
hsa-miR-19b-3p
0.898
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000623959
Biotype: antisense
Gene id: ENSG00000279184
Gene Name: RP3-323A16.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-19b-3p
Sequence: ugugcaaauccaugcaaaacuga
MirBase ID: MIMAT0000074
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
52104-52122
0.005
0
7mer
39336-39356
0.003
1
7mer
48916-48936
0.003
1
7mer
39009-39025
0.002
0
6mer
24578-24601
0.002
0
6mer
48864-48883
0.002
1
6mer
20924-20928
0.002
1
6mer
17506-17526
0.002
3
6mer
48615-48632
0.002
1
6mer
23322-23346
0.002
1
6mer
31649-31669
0.002
0
6mer
10724-10736
0.001
0
6mer
43132-43156
0.001
1
6mer
27623-27648
0.001
0
6mer
42801-42810
0.001
1
6mer
51599-51624
0.001
1
6mer
44013-44031
0.001
1
6mer
11593-11605
0.001
1
6mer
15736-15759
0.001
0
6mer
51194-51213
0.001
0
6mer
21339-21353
0.001
0
6mer
38055-38079
0.001
1
6mer
41218-41245
0.001
1
6mer
28360-28381
0.001
0
6mer
16783-16803
0.001
0
6mer
17189-17214
0.001
3
XLOC_008616
hsa-miR-19b-3p
0.898
mTTBlnEmP

Gene Details
Chromosome: chr10
Transcript: TCONS_00018336
Biotype: transcript isomorph
Gene id: XLOC_008616
Gene Name: XLOC_008616
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary


miRNA Details
Name: hsa-miR-19b-3p
Sequence: ugugcaaauccaugcaaaacuga
MirBase ID: MIMAT0000074
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
14-35
0.046
2
RP11-561E1.1
hsa-miR-19b-3p
0.897
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000519893
Biotype: antisense
Gene id: ENSG00000253643
Gene Name: RP11-561E1.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-19b-3p
Sequence: ugugcaaauccaugcaaaacuga
MirBase ID: MIMAT0000074
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
375-397
0.046
1
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