LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-19b-3p


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Gene
miRNA
Score
DIANA Links
AF240627.2
hsa-miR-19b-3p
0.926
mTTBlnEmP

Gene Details
Chromosome: 21
Transcript: ENST00000416002
Biotype: lincRNA
Gene id: ENSG00000230233
Gene Name: AF240627.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-19b-3p
Sequence: ugugcaaauccaugcaaaacuga
MirBase ID: MIMAT0000074
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
606-623
0.052
1
XLOC_003700
hsa-miR-19b-3p
0.924
mTTBlnEmP

Gene Details
Chromosome: chr4
Transcript: TCONS_00007404
Biotype: transcript isomorph
Gene id: XLOC_003700
Gene Name: XLOC_003700
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-19b-3p
Sequence: ugugcaaauccaugcaaaacuga
MirBase ID: MIMAT0000074
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
849-866
0.044
1
7mer
1212-1235
0.007
1
RP11-785F11.1
hsa-miR-19b-3p
0.924
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000509798
Biotype: lincRNA
Gene id: ENSG00000250341
Gene Name: RP11-785F11.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-19b-3p
Sequence: ugugcaaauccaugcaaaacuga
MirBase ID: MIMAT0000074
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
849-866
0.044
1
7mer
1212-1235
0.007
1
LINC00094
hsa-miR-19b-3p
0.924
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000603928
Biotype: antisense
Gene id: ENSG00000235106
Gene Name: LINC00094
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
HMEpC Mammary Gland Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-19b-3p
Sequence: ugugcaaauccaugcaaaacuga
MirBase ID: MIMAT0000074
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
565-586
0.039
1
6mer
4130-4147
0.005
10
7mer
1416-1432
0.004
1
6mer
779-795
0.002
1
6mer
1870-1887
0.001
0
6mer
2503-2522
0.001
0
RP11-664D7.4
hsa-miR-19b-3p
0.923
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000584858
Biotype: antisense
Gene id: ENSG00000248801
Gene Name: RP11-664D7.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-19b-3p
Sequence: ugugcaaauccaugcaaaacuga
MirBase ID: MIMAT0000074
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
232-252
0.051
1
XLOC_002759
hsa-miR-19b-3p
0.923
mTTBlnEmP

Gene Details
Chromosome: chr3
Transcript: TCONS_00006930
Biotype: transcript isomorph
Gene id: XLOC_002759
Gene Name: XLOC_002759
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-19b-3p
Sequence: ugugcaaauccaugcaaaacuga
MirBase ID: MIMAT0000074
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
137-151
0.038
1
8mer
1269-1296
0.011
Not Conserved
6mer
4197-4216
0.002
2
6mer
2979-2989
0.001
0
RP11-416I2.1
hsa-miR-19b-3p
0.923
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000562897
Biotype: lincRNA
Gene id: ENSG00000260328
Gene Name: RP11-416I2.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
HeLa Cervix Cancer/Malignant


miRNA Details
Name: hsa-miR-19b-3p
Sequence: ugugcaaauccaugcaaaacuga
MirBase ID: MIMAT0000074
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2528-2546
0.031
1
8mer
3038-3062
0.020
1
RP11-44D19.1
hsa-miR-19b-3p
0.923
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000522281
Biotype: lincRNA
Gene id: ENSG00000253376
Gene Name: RP11-44D19.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant


miRNA Details
Name: hsa-miR-19b-3p
Sequence: ugugcaaauccaugcaaaacuga
MirBase ID: MIMAT0000074
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
259-281
0.051
1
XLOC_008999
hsa-miR-19b-3p
0.922
mTTBlnEmP

Gene Details
Chromosome: chr10
Transcript: TCONS_00018648
Biotype: transcript isomorph
Gene id: XLOC_008999
Gene Name: XLOC_008999
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-19b-3p
Sequence: ugugcaaauccaugcaaaacuga
MirBase ID: MIMAT0000074
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
219-238
0.046
0
6mer
502-525
0.005
0
RP11-214C8.2
hsa-miR-19b-3p
0.921
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000580942
Biotype: lincRNA
Gene id: ENSG00000264954
Gene Name: RP11-214C8.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-19b-3p
Sequence: ugugcaaauccaugcaaaacuga
MirBase ID: MIMAT0000074
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2814-2832
0.012
0
7mer
2752-2777
0.010
1
7mer
2726-2731
0.009
1
7mer
2786-2806
0.007
0
7mer
2838-2860
0.007
0
6mer
2770-2796
0.003
1
6mer
2893-2916
0.003
Not Conserved
CH17-264L24.1
hsa-miR-19b-3p
0.920
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000624350
Biotype: lincRNA
Gene id: ENSG00000279278
Gene Name: CH17-264L24.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-19b-3p
Sequence: ugugcaaauccaugcaaaacuga
MirBase ID: MIMAT0000074
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
5822-5844
0.029
0
6mer
71-89
0.009
1
6mer
7703-7718
0.004
0
6mer
7278-7303
0.003
0
6mer
4546-4568
0.002
0
6mer
6161-6165
0.002
0
6mer
1456-1476
0.002
0
6mer
2912-2933
0.001
0
DNM3OS
hsa-miR-19b-3p
0.919
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: NR_103486.1
Biotype: antisense
Gene id: NR_103486.1 (gene)
Gene Name: DNM3OS
UCSC graphic: -
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-19b-3p
Sequence: ugugcaaauccaugcaaaacuga
MirBase ID: MIMAT0000074
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
3861-3886
0.046
6
6mer
3567-3571
0.005
2
CTC-458G6.4
hsa-miR-19b-3p
0.919
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000502383
Biotype: lincRNA
Gene id: ENSG00000248588
Gene Name: CTC-458G6.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-19b-3p
Sequence: ugugcaaauccaugcaaaacuga
MirBase ID: MIMAT0000074
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
509-532
0.050
0
RP11-276H1.2
hsa-miR-19b-3p
0.919
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000566957
Biotype: antisense
Gene id: ENSG00000261293
Gene Name: RP11-276H1.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-19b-3p
Sequence: ugugcaaauccaugcaaaacuga
MirBase ID: MIMAT0000074
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
172-185
0.050
3
C9orf147
hsa-miR-19b-3p
0.918
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000463223
Biotype: antisense
Gene id: ENSG00000230185
Gene Name: C9orf147
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
HeLa Cervix Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-19b-3p
Sequence: ugugcaaauccaugcaaaacuga
MirBase ID: MIMAT0000074
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
221-246
0.050
1
XLOC_014102
hsa-miR-19b-3p
0.918
mTTBlnEmP

Gene Details
Chromosome: chr21
Transcript: TCONS_00029156
Biotype: transcript isomorph
Gene id: XLOC_014102
Gene Name: XLOC_014102
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
Fibroblasts Lung Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-19b-3p
Sequence: ugugcaaauccaugcaaaacuga
MirBase ID: MIMAT0000074
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
512-518
0.026
1
8mer
3426-3450
0.025
1
RP11-849F2.4
hsa-miR-19b-3p
0.918
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000585275
Biotype: lincRNA
Gene id: ENSG00000266279
Gene Name: RP11-849F2.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-19b-3p
Sequence: ugugcaaauccaugcaaaacuga
MirBase ID: MIMAT0000074
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
324-331
0.050
1
XLOC_005575
hsa-miR-19b-3p
0.917
mTTBlnEmP

Gene Details
Chromosome: chr6
Transcript: TCONS_00012041
Biotype: transcript isomorph
Gene id: XLOC_005575
Gene Name: XLOC_005575
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
Fibroblasts Lung Normal/Primary
- Lung Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-19b-3p
Sequence: ugugcaaauccaugcaaaacuga
MirBase ID: MIMAT0000074
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1614-1634
0.019
1
7mer
362-387
0.018
4
7mer
1825-1849
0.011
1
7mer
1071-1092
0.002
0
6mer
925-949
0.001
0
RP11-140I24.1
hsa-miR-19b-3p
0.917
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000555721
Biotype: lincRNA
Gene id: ENSG00000258779
Gene Name: RP11-140I24.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-19b-3p
Sequence: ugugcaaauccaugcaaaacuga
MirBase ID: MIMAT0000074
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
715-735
0.050
5
XLOC_009511
hsa-miR-19b-3p
0.912
mTTBlnEmP

Gene Details
Chromosome: chr11
Transcript: TCONS_00020103
Biotype: transcript isomorph
Gene id: XLOC_009511
Gene Name: XLOC_009511
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Heart Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Ovary Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-19b-3p
Sequence: ugugcaaauccaugcaaaacuga
MirBase ID: MIMAT0000074
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
720-737
0.049
0
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